Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_H24
         (896 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5 ...    27   2.7  
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    26   8.4  
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    26   8.4  

>SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 358

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +3

Query: 738 PPLFIXNDVMSYFMEDVD--LNPYMYXLHMNY 827
           PP  I  +++S+F+  VD  L+PY+     NY
Sbjct: 290 PPTTILKELLSFFLSKVDTKLHPYLIQAAANY 321


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
            Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +1

Query: 160  VFTKEPMVNLDMKMKELCIMKLLDHILQPTMFEDIKEIAKEYNIE 294
            + TK  + + D K+K       +++ L P+    I  IAK+YN E
Sbjct: 1174 IMTKSVIEHTDKKVK----FWFIENFLSPSFKSSIPAIAKKYNFE 1214


>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1064

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 769 DITSXWIKSGGLPYASQSLP 710
           ++   W +SG +PYAS+  P
Sbjct: 519 EVFDCWFESGSMPYASRHYP 538


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,900,949
Number of Sequences: 5004
Number of extensions: 50581
Number of successful extensions: 142
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)