Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_H24
         (896 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0204 - 19022329-19023990                                         29   3.8  
02_01_0223 + 1453478-1453750,1455788-1456018,1456066-1456200,145...    29   3.8  
10_08_0786 - 20540061-20542106                                         28   8.8  

>05_04_0204 - 19022329-19023990
          Length = 553

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 289 IEKSCDKYMNVDVVKXFMEMYKMGXLPRGETF 384
           + K CD++  + VVK F +M K G  P   TF
Sbjct: 355 MRKLCDEHRWLSVVKLFTDMAKKGIAPNSWTF 386


>02_01_0223 +
           1453478-1453750,1455788-1456018,1456066-1456200,
           1457918-1457971,1458417-1458482,1458593-1458679,
           1459338-1459394,1459470-1459500,1459577-1459634,
           1459710-1459761,1459881-1459917,1460008-1460210,
           1460556-1460633,1460683-1460853,1461126-1461239
          Length = 548

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = -3

Query: 645 HLHHKGFTXDMAVNEEVGIDLVRSGQVETLAVGSVEARG 529
           H HH G   D A   EV  D V +      A G+V+ RG
Sbjct: 24  HHHHDGAAGDSAAAAEVPQDKVVAAAAAAAAAGNVQRRG 62


>10_08_0786 - 20540061-20542106
          Length = 681

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +1

Query: 325 VVKXFMEMYKMGXLPRGETFVHTNELQMEEAVKVFRVLYYAK 450
           V K  +EM KMG +PR E   H     +EE VK  ++ Y+++
Sbjct: 578 VAKLDLEMRKMGYIPRTEFVYH----DLEEEVKEQQLSYHSE 615


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,181,790
Number of Sequences: 37544
Number of extensions: 371772
Number of successful extensions: 801
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)