Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_H23
         (882 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_294| Best HMM Match : Ribosomal_L14 (HMM E-Value=4.1e-23)           81   1e-15
SB_18720| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  

>SB_294| Best HMM Match : Ribosomal_L14 (HMM E-Value=4.1e-23)
          Length = 145

 Score = 81.0 bits (191), Expect = 1e-15
 Identities = 39/60 (65%), Positives = 44/60 (73%)
 Frame = +3

Query: 216 GRLNXLPAAGSGDXIVAXVKKGXPELRKKVMPAVVXRXRXPFXRRXGVFIYFEXXAGVXV 395
           GRLN LPAA SGD ++A VKKG PELRKKVMPAVV R R  + R+ GVF+YFE    V V
Sbjct: 66  GRLNRLPAAASGDMVLATVKKGKPELRKKVMPAVVIRQRKAYRRKNGVFLYFEANIKVRV 125



 Score = 47.2 bits (107), Expect = 2e-05
 Identities = 20/24 (83%), Positives = 22/24 (91%)
 Frame = +1

Query: 103 AGAXFRISLGLPVGAVINCADNTG 174
           +G  FRI+LGLPVGAVINCADNTG
Sbjct: 29  SGGKFRIALGLPVGAVINCADNTG 52


>SB_18720| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 61

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +2

Query: 92  WWFPRXRNSVSPWVSQWXX*STA 160
           +WFP   NS SPW   W    TA
Sbjct: 2   FWFPSSFNSWSPWTWNWSFVGTA 24


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,107,086
Number of Sequences: 59808
Number of extensions: 233184
Number of successful extensions: 380
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2514529411
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)