Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_H23
         (882 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-3487|AAF46914.1|  140|Drosophila melanogaster CG3661-PA...   138   9e-33
M85295-1|AAA28867.1|  140|Drosophila melanogaster ribosomal prot...   126   5e-29

>AE013599-3487|AAF46914.1|  140|Drosophila melanogaster CG3661-PA
           protein.
          Length = 140

 Score =  138 bits (334), Expect = 9e-33
 Identities = 67/85 (78%), Positives = 67/85 (78%)
 Frame = +3

Query: 216 GRLNXLPAAGSGDXIVAXVKKGXPELRKKVMPAVVXRXRXPFXRRXGVFIYFEXXAGVXV 395
           GRLN LPAAG GD  VA VKKG PELRKKVMPAVV R R PF RR GVFIYFE  AGV V
Sbjct: 47  GRLNRLPAAGVGDMFVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIV 106

Query: 396 XNXGXMKGSAXTGPVAKECADLWPR 470
            N G MKGSA TGPVAKECADLWPR
Sbjct: 107 NNKGEMKGSAITGPVAKECADLWPR 131



 Score = 48.4 bits (110), Expect = 1e-05
 Identities = 21/24 (87%), Positives = 22/24 (91%)
 Frame = +1

Query: 103 AGAXFRISLGLPVGAVINCADNTG 174
           AG  FRISLGLPVGAV+NCADNTG
Sbjct: 10  AGGKFRISLGLPVGAVMNCADNTG 33


>M85295-1|AAA28867.1|  140|Drosophila melanogaster ribosomal protein
           L17A protein.
          Length = 140

 Score =  126 bits (303), Expect = 5e-29
 Identities = 62/85 (72%), Positives = 62/85 (72%)
 Frame = +3

Query: 216 GRLNXLPAAGSGDXIVAXVKKGXPELRKKVMPAVVXRXRXPFXRRXGVFIYFEXXAGVXV 395
           GRLN LPAAG GD  VA VKKG PELRKKV      R R PF RR GVFIYFE  AGV V
Sbjct: 47  GRLNRLPAAGVGDMFVATVKKGKPELRKKVSVVPSARQRKPFRRRDGVFIYFEDNAGVIV 106

Query: 396 XNXGXMKGSAXTGPVAKECADLWPR 470
            N G MKGSA TGPVAKECADLWPR
Sbjct: 107 NNKGEMKGSAITGPVAKECADLWPR 131



 Score = 48.4 bits (110), Expect = 1e-05
 Identities = 21/24 (87%), Positives = 22/24 (91%)
 Frame = +1

Query: 103 AGAXFRISLGLPVGAVINCADNTG 174
           AG  FRISLGLPVGAV+NCADNTG
Sbjct: 10  AGGKFRISLGLPVGAVMNCADNTG 33


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,738,494
Number of Sequences: 53049
Number of extensions: 456480
Number of successful extensions: 1093
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4291240668
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)