Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_H23
         (882 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal prot...   123   1e-28
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    24   6.1  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    24   6.1  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    24   6.2  

>U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 23 protein.
          Length = 140

 Score =  123 bits (297), Expect = 1e-28
 Identities = 59/85 (69%), Positives = 62/85 (72%)
 Frame = +3

Query: 216 GRLNXLPAAGSGDXIVAXVKKGXPELRKKVMPAVVXRXRXPFXRRXGVFIYFEXXAGVXV 395
           GRLN LP+AG GD  V  VKKG PELRKKV+  VV R R  F R+ G FIYFE  AGV V
Sbjct: 47  GRLNRLPSAGVGDMFVCSVKKGKPELRKKVLQGVVIRQRKQFRRKDGTFIYFEDNAGVIV 106

Query: 396 XNXGXMKGSAXTGPVAKECADLWPR 470
            N G MKGSA TGPVAKECADLWPR
Sbjct: 107 NNKGEMKGSAITGPVAKECADLWPR 131



 Score = 48.8 bits (111), Expect = 5e-06
 Identities = 21/24 (87%), Positives = 23/24 (95%)
 Frame = +1

Query: 103 AGAXFRISLGLPVGAVINCADNTG 174
           +GA FRISLGLPVGAV+NCADNTG
Sbjct: 10  SGAKFRISLGLPVGAVMNCADNTG 33


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 24.2 bits (50), Expect(2) = 6.1
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +1

Query: 802 GXXXPVXXAXXPPPPPG 852
           G   P+     PPPPPG
Sbjct: 733 GGLPPITGGPPPPPPPG 749



 Score = 22.6 bits (46), Expect(2) = 6.1
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +1

Query: 835 PPPPPGXXXXXLAPP 879
           PPPPPG       PP
Sbjct: 761 PPPPPGGCPPPPPPP 775


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 24.2 bits (50), Expect(2) = 6.1
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +1

Query: 802 GXXXPVXXAXXPPPPPG 852
           G   P+     PPPPPG
Sbjct: 733 GGLPPITGGPPPPPPPG 749



 Score = 22.6 bits (46), Expect(2) = 6.1
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +1

Query: 835 PPPPPGXXXXXLAPP 879
           PPPPPG       PP
Sbjct: 761 PPPPPGGCPPPPPPP 775


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 24.2 bits (50), Expect(2) = 6.2
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +1

Query: 802 GXXXPVXXAXXPPPPPG 852
           G   P+     PPPPPG
Sbjct: 316 GGLPPITGGPPPPPPPG 332



 Score = 22.6 bits (46), Expect(2) = 6.2
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +1

Query: 835 PPPPPGXXXXXLAPP 879
           PPPPPG       PP
Sbjct: 344 PPPPPGGCPPPPPPP 358


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,726,374
Number of Sequences: 27780
Number of extensions: 188736
Number of successful extensions: 436
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)