Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_H23
         (882 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04400.1 68416.m00466 60S ribosomal protein L23 (RPL23C) simi...   121   7e-28
At2g33370.1 68415.m04090 60S ribosomal protein L23 (RPL23B)           121   7e-28
At1g04480.1 68414.m00439 60S ribosomal protein L23 (RPL23A) iden...   121   7e-28

>At3g04400.1 68416.m00466 60S ribosomal protein L23 (RPL23C) similar
           to ribosomal protein L17 GB:AAA34113.1 from [Nicotiana
           tabacum]
          Length = 140

 Score =  121 bits (291), Expect = 7e-28
 Identities = 55/85 (64%), Positives = 65/85 (76%)
 Frame = +3

Query: 216 GRLNXLPAAGSGDXIVAXVKKGXPELRKKVMPAVVXRXRXPFXRRXGVFIYFEXXAGVXV 395
           GRLN LP+A  GD ++A VKKG P+LRKKV+PAV+ R R P+ R+ GVF+YFE  AGV V
Sbjct: 47  GRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIV 106

Query: 396 XNXGXMKGSAXTGPVAKECADLWPR 470
              G MKGSA TGP+ KECADLWPR
Sbjct: 107 NPKGEMKGSAITGPIGKECADLWPR 131



 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 17/24 (70%), Positives = 20/24 (83%)
 Frame = +1

Query: 103 AGAXFRISLGLPVGAVINCADNTG 174
           +G  FR+SLGLPV A +NCADNTG
Sbjct: 10  SGNKFRMSLGLPVAATVNCADNTG 33


>At2g33370.1 68415.m04090 60S ribosomal protein L23 (RPL23B)
          Length = 140

 Score =  121 bits (291), Expect = 7e-28
 Identities = 55/85 (64%), Positives = 65/85 (76%)
 Frame = +3

Query: 216 GRLNXLPAAGSGDXIVAXVKKGXPELRKKVMPAVVXRXRXPFXRRXGVFIYFEXXAGVXV 395
           GRLN LP+A  GD ++A VKKG P+LRKKV+PAV+ R R P+ R+ GVF+YFE  AGV V
Sbjct: 47  GRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIV 106

Query: 396 XNXGXMKGSAXTGPVAKECADLWPR 470
              G MKGSA TGP+ KECADLWPR
Sbjct: 107 NPKGEMKGSAITGPIGKECADLWPR 131



 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 17/24 (70%), Positives = 20/24 (83%)
 Frame = +1

Query: 103 AGAXFRISLGLPVGAVINCADNTG 174
           +G  FR+SLGLPV A +NCADNTG
Sbjct: 10  SGNKFRMSLGLPVAATVNCADNTG 33


>At1g04480.1 68414.m00439 60S ribosomal protein L23 (RPL23A)
           identical to GB:AAB80655
          Length = 140

 Score =  121 bits (291), Expect = 7e-28
 Identities = 55/85 (64%), Positives = 65/85 (76%)
 Frame = +3

Query: 216 GRLNXLPAAGSGDXIVAXVKKGXPELRKKVMPAVVXRXRXPFXRRXGVFIYFEXXAGVXV 395
           GRLN LP+A  GD ++A VKKG P+LRKKV+PAV+ R R P+ R+ GVF+YFE  AGV V
Sbjct: 47  GRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIV 106

Query: 396 XNXGXMKGSAXTGPVAKECADLWPR 470
              G MKGSA TGP+ KECADLWPR
Sbjct: 107 NPKGEMKGSAITGPIGKECADLWPR 131



 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 17/24 (70%), Positives = 20/24 (83%)
 Frame = +1

Query: 103 AGAXFRISLGLPVGAVINCADNTG 174
           +G  FR+SLGLPV A +NCADNTG
Sbjct: 10  SGNKFRMSLGLPVAATVNCADNTG 33


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,099,202
Number of Sequences: 28952
Number of extensions: 179209
Number of successful extensions: 431
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2077687200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)