Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_H21
         (951 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   1.3  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    29   1.3  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   1.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   2.9  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   2.9  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 16/52 (30%), Positives = 19/52 (36%)
 Frame = +3

Query: 780  LSGKAVAPFXLXPXPLXFPXXPGXXVPSPPXPXAXXXPXPPXXXPXPXPPFS 935
            +S   V P    P  +  P  P   +  PP P A   P  P   P P  P S
Sbjct: 1687 VSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPAS 1738


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 14/40 (35%), Positives = 15/40 (37%)
 Frame = +3

Query: 816 PXPLXFPXXPGXXVPSPPXPXAXXXPXPPXXXPXPXPPFS 935
           P  L  P  P   V SPP   +     PP     P PP S
Sbjct: 168 PSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPLS 207


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 14/36 (38%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
 Frame = +3

Query: 834 PXXPGXXVPSP-PXPXAXXXPXPPXXXPXPXPPFSG 938
           P  P   VP+P P P     P P    P P PP  G
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPG 769



 Score = 26.2 bits (55), Expect = 6.8
 Identities = 15/40 (37%), Positives = 15/40 (37%)
 Frame = +3

Query: 816 PXPLXFPXXPGXXVPSPPXPXAXXXPXPPXXXPXPXPPFS 935
           P P   P   G   P PP   A   P PP   P P P  S
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPP---PPPPPAVS 786


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 17/48 (35%), Positives = 18/48 (37%)
 Frame = +3

Query: 786 GKAVAPFXLXPXPLXFPXXPGXXVPSPPXPXAXXXPXPPXXXPXPXPP 929
           G   AP  L P     P  P     +PP P A   P PP   P P  P
Sbjct: 442 GAPAAP-PLPPSAPIAPPLPAGMPAAPPLPPAAPAP-PPAPAPAPAAP 487


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 27/98 (27%), Positives = 33/98 (33%), Gaps = 7/98 (7%)
 Frame = +3

Query: 654  PKPDRTIKXPXXFPPGKXP-PXXSSLFPTPARXTGXXXXXXXXLSGKAV-APFXLXPXP- 824
            PKP   +  P   P G  P P  S   P     +G        ++   V AP    P P 
Sbjct: 1105 PKPSVAVP-PVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPK 1163

Query: 825  --LXFPXXPGXX--VPSPPXPXAXXXPXPPXXXPXPXP 926
              +  P  P     +P  P P A   P PP     P P
Sbjct: 1164 PSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVP 1201



 Score = 25.8 bits (54), Expect = 9.0
 Identities = 24/93 (25%), Positives = 29/93 (31%), Gaps = 1/93 (1%)
 Frame = +3

Query: 654  PKPDRTIKXPXXFPPGKXP-PXXSSLFPTPARXTGXXXXXXXXLSGKAVAPFXLXPXPLX 830
            P P  +   P   P    P P  SS  P+              +   + AP    P P  
Sbjct: 1033 PIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAP--PVPAPSG 1090

Query: 831  FPXXPGXXVPSPPXPXAXXXPXPPXXXPXPXPP 929
             P  P   V +PP P       PP   P   PP
Sbjct: 1091 IPPVPKPSVAAPPVP-KPSVAVPPVPAPSGAPP 1122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,590,256
Number of Sequences: 5004
Number of extensions: 40615
Number of successful extensions: 130
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 485316198
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)