Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_H20
         (905 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.05c |||tyrosine-tRNA ligase |Schizosaccharomyces pombe|...    28   1.6  
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    27   2.8  
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    27   4.8  
SPAPB1A10.11c |||glutamyl-tRNA synthetase, mitochondrial|Schizos...    26   6.4  

>SPCC1672.05c |||tyrosine-tRNA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 401

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 625 LLSKCMXPAVEFLDTDVTGIGXELGGINDSNIF 723
           LLS  + P ++ LD    G+  + GG++   IF
Sbjct: 158 LLSSLIYPGMQALDEQYLGVDVQFGGVDQRKIF 190


>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
           pyrophosphate synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 920

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 10/39 (25%), Positives = 25/39 (64%)
 Frame = +1

Query: 436 NCNGEQVRFATDLYADLCHLLTNHLVEIKQPIRGLEILK 552
           N +G+++RF T+L  +  ++ +   +  +QP+ G ++L+
Sbjct: 286 NPHGKEIRFITNLSEEEKNMASKISIAFEQPVCGFDLLR 324


>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 480 RFVSSTHKSFGRNQTTNKGPGNIKKGY 560
           R+ S  H++  R   T+K P N+KKG+
Sbjct: 141 RWWSRDHRAHHRYTDTDKDPYNVKKGF 167


>SPAPB1A10.11c |||glutamyl-tRNA synthetase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +1

Query: 490 HLLTNHLVEIKQPIRGLEILKKAIRKIQLFDS 585
           +++ +HL+ I   IRG E +   I+ IQL+++
Sbjct: 226 NVVDDHLMHITHVIRGEEWVPSTIKHIQLYEA 257


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,489,881
Number of Sequences: 5004
Number of extensions: 41138
Number of successful extensions: 81
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)