Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_H20
         (905 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5257| Best HMM Match : SlyX (HMM E-Value=2.2)                       32   0.55 
SB_56096| Best HMM Match : fn3 (HMM E-Value=1.3e-24)                   32   0.73 
SB_41175| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_57045| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  
SB_26544| Best HMM Match : TEP1_N (HMM E-Value=2.7)                    28   9.0  
SB_14800| Best HMM Match : zf-B_box (HMM E-Value=8.2e-07)              28   9.0  
SB_6523| Best HMM Match : zf-B_box (HMM E-Value=4.4e-11)               28   9.0  

>SB_5257| Best HMM Match : SlyX (HMM E-Value=2.2)
          Length = 641

 Score = 32.3 bits (70), Expect = 0.55
 Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
 Frame = +1

Query: 445 GEQVRFATDLYADLCHLLTNHLVEIKQPIRG--LEILKKAIRKIQLFDSQLTSIHADLCQ 618
           GE V F+TDLY      + + L+E++  +R    + L+KA+      +  +T +  DL +
Sbjct: 475 GENVDFSTDLYP--TGNVEDWLLEVENTMRNSLRDTLRKALELYPTLNDLVTLVRGDLSK 532

Query: 619 LCLLSKCMXPAVEFLDTDVTGIGXELGGINDSNIFYYI 732
           L  L       +E    DV G   E  G   +N F +I
Sbjct: 533 LARLILGALIVIEVHACDVAGKMVE-EGFQSANDFEWI 569


>SB_56096| Best HMM Match : fn3 (HMM E-Value=1.3e-24)
          Length = 1065

 Score = 31.9 bits (69), Expect = 0.73
 Identities = 20/78 (25%), Positives = 40/78 (51%)
 Frame = +1

Query: 463  ATDLYADLCHLLTNHLVEIKQPIRGLEILKKAIRKIQLFDSQLTSIHADLCQLCLLSKCM 642
            A D +  L    T  +V+   P++   + K+  RK++L ++ +T   ++   LC+    +
Sbjct: 987  AIDSHRKLIAKSTQLIVQTSAPLQKPVLRKRLCRKLELLNNSVTGCESNPSFLCIR---L 1043

Query: 643  XPAVEFLDTDVTGIGXEL 696
               +E L+T VT +G +L
Sbjct: 1044 CRKLELLNTSVTVMGAKL 1061


>SB_41175| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3259

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 19/91 (20%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
 Frame = +1

Query: 448  EQVRFATDLYADLCHLLTNHLVEIKQPIRGLEI-LKKAIRKIQLFDSQLTSIHADLCQLC 624
            E+++F  D  +     +T    ++K+ +  LE  L+ + ++ +   SQ+  +  DL +  
Sbjct: 2308 EEMQFLLDKKSKKLERITKESKDLKEKVTSLEEELRLSNKQSERLTSQVQRLERDLDEAA 2367

Query: 625  LLSKCMXPAVEFLDTDVTGIGXELGGINDSN 717
                 M   +  L+     +  E+ G+ND N
Sbjct: 2368 AQKSDMEDRIATLEKRYVRMQHEVTGLNDDN 2398


>SB_57045| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 362

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
 Frame = +1

Query: 391 VDRSTMYQQFHDFINNCNGEQVRFATDLYADLCHLLTNHLVEIKQPIRGLEILKKAIRKI 570
           VD       F DF+ +   + ++   D  + + + L  HL  ++  +R +E+ K ++ ++
Sbjct: 180 VDHKGHDYNFTDFVADREKKIIKGKIDEVSKMGNDLNEHLASVRAAMRKVELKKHSMNEV 239

Query: 571 --QLFDSQLT 594
             Q  D Q+T
Sbjct: 240 VDQFIDKQIT 249


>SB_26544| Best HMM Match : TEP1_N (HMM E-Value=2.7)
          Length = 187

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
 Frame = +1

Query: 391 VDRSTMYQQFHDFINNCNGEQVRFATDLYADLCHLLTNHLVEIKQPIRGLEILKKAIRKI 570
           VD       F DF+ +   + ++   D  + + + L  HL  ++  +R +E+ K ++ ++
Sbjct: 5   VDHKGHDYNFTDFVADREKKIIKGKIDEVSKMGNDLNEHLASVRAAMRKVELKKHSMNEV 64

Query: 571 --QLFDSQLT 594
             Q  D Q+T
Sbjct: 65  VDQFIDKQIT 74


>SB_14800| Best HMM Match : zf-B_box (HMM E-Value=8.2e-07)
          Length = 361

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
 Frame = +1

Query: 391 VDRSTMYQQFHDFINNCNGEQVRFATDLYADLCHLLTNHLVEIKQPIRGLEILKKAIRKI 570
           VD       F DF+ +   + ++   D  + + + L  HL  ++  +R +E+ K ++ ++
Sbjct: 179 VDHKGHDYNFTDFVADREKKIIKGKIDEVSKMGNDLNEHLASVRAAMRKVELKKHSMNEV 238

Query: 571 --QLFDSQLT 594
             Q  D Q+T
Sbjct: 239 VDQFIDKQIT 248


>SB_6523| Best HMM Match : zf-B_box (HMM E-Value=4.4e-11)
          Length = 275

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
 Frame = +1

Query: 391 VDRSTMYQQFHDFINNCNGEQVRFATDLYADLCHLLTNHLVEIKQPIRGLEILKKAIRKI 570
           VD       F DF+ +   + ++   D  + + + L  HL  ++  +R +E+ K ++ ++
Sbjct: 93  VDHKGHDYNFTDFVADREKKIIKGKIDEVSKMGNDLNEHLASVRAAMRKVELKKHSMNEV 152

Query: 571 --QLFDSQLT 594
             Q  D Q+T
Sbjct: 153 VDQFIDKQIT 162


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,364,471
Number of Sequences: 59808
Number of extensions: 286212
Number of successful extensions: 495
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2609867019
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)