Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_H20
         (905 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC001891-1|AAH01891.1|  423|Homo sapiens COP9 constitutive photo...   141   4e-33
AF098109-1|AAD41247.1|  423|Homo sapiens COP9 complex subunit 3 ...   141   4e-33
AF031647-1|AAC14197.1|  403|Homo sapiens JAB1-containing signalo...   141   4e-33

>BC001891-1|AAH01891.1|  423|Homo sapiens COP9 constitutive
           photomorphogenic homolog subunit 3 (Arabidopsis)
           protein.
          Length = 423

 Score =  141 bits (341), Expect = 4e-33
 Identities = 72/154 (46%), Positives = 93/154 (60%)
 Frame = +1

Query: 394 DRSTMYQQFHDFINNCNGEQVRFATDLYADLCHLLTNHLVEIKQPIRGLEILKKAIRKIQ 573
           D  T++ Q   FI+ CNGE +R+ATD +A LCH LTN LVE KQP+RG+ ILK+AI K+Q
Sbjct: 73  DFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGIGILKQAIDKMQ 132

Query: 574 LFDSQLTSIHADLCQLCLLSKCMXPAVEFLDTDVTGIGXELGGINDSNIFYYIITMGA*F 753
           +  +QLTSIHADLCQLCLL+KC  PA+ +LD D+  I  E G  +  +   Y    G  +
Sbjct: 133 MNTNQLTSIHADLCQLCLLAKCFKPALPYLDVDMMDICKENGAYDAKHFLCYYYYGGMIY 192

Query: 754 IRX*KL**SFVFL*SCXXCXGXVVXHIMLEAYKK 855
                   +  F           V HIMLE+YKK
Sbjct: 193 TGLKNFERALYFYEQAITTPAMAVSHIMLESYKK 226



 Score = 62.5 bits (145), Expect = 2e-09
 Identities = 33/63 (52%), Positives = 39/63 (61%)
 Frame = +3

Query: 189 FVNNVRXXSASGNFRAXSXLXAKSXXVLQXXXFHLNTVLETLDIQQHSLGVLAVLVAKFS 368
           FVN+VR  SA G       L  KS  +L     HL+TVL  LD+Q+HSLGVLAVL  KFS
Sbjct: 8   FVNSVRQLSAQGQMTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLAVLFVKFS 67

Query: 369 LXS 377
           + S
Sbjct: 68  MPS 70


>AF098109-1|AAD41247.1|  423|Homo sapiens COP9 complex subunit 3
           protein.
          Length = 423

 Score =  141 bits (341), Expect = 4e-33
 Identities = 72/154 (46%), Positives = 93/154 (60%)
 Frame = +1

Query: 394 DRSTMYQQFHDFINNCNGEQVRFATDLYADLCHLLTNHLVEIKQPIRGLEILKKAIRKIQ 573
           D  T++ Q   FI+ CNGE +R+ATD +A LCH LTN LVE KQP+RG+ ILK+AI K+Q
Sbjct: 73  DFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGIGILKQAIDKMQ 132

Query: 574 LFDSQLTSIHADLCQLCLLSKCMXPAVEFLDTDVTGIGXELGGINDSNIFYYIITMGA*F 753
           +  +QLTSIHADLCQLCLL+KC  PA+ +LD D+  I  E G  +  +   Y    G  +
Sbjct: 133 MNTNQLTSIHADLCQLCLLAKCFKPALPYLDVDMMDICKENGAYDAKHFLCYYYYGGMIY 192

Query: 754 IRX*KL**SFVFL*SCXXCXGXVVXHIMLEAYKK 855
                   +  F           V HIMLE+YKK
Sbjct: 193 TGLKNFERALYFYEQAITTPAMAVSHIMLESYKK 226



 Score = 62.5 bits (145), Expect = 2e-09
 Identities = 33/63 (52%), Positives = 39/63 (61%)
 Frame = +3

Query: 189 FVNNVRXXSASGNFRAXSXLXAKSXXVLQXXXFHLNTVLETLDIQQHSLGVLAVLVAKFS 368
           FVN+VR  SA G       L  KS  +L     HL+TVL  LD+Q+HSLGVLAVL  KFS
Sbjct: 8   FVNSVRQLSAQGQMTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLAVLFVKFS 67

Query: 369 LXS 377
           + S
Sbjct: 68  MPS 70


>AF031647-1|AAC14197.1|  403|Homo sapiens JAB1-containing
           signalosome subunit 3 protein.
          Length = 403

 Score =  141 bits (341), Expect = 4e-33
 Identities = 72/154 (46%), Positives = 93/154 (60%)
 Frame = +1

Query: 394 DRSTMYQQFHDFINNCNGEQVRFATDLYADLCHLLTNHLVEIKQPIRGLEILKKAIRKIQ 573
           D  T++ Q   FI+ CNGE +R+ATD +A LCH LTN LVE KQP+RG+ ILK+AI K+Q
Sbjct: 53  DFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGIGILKQAIDKMQ 112

Query: 574 LFDSQLTSIHADLCQLCLLSKCMXPAVEFLDTDVTGIGXELGGINDSNIFYYIITMGA*F 753
           +  +QLTSIHADLCQLCLL+KC  PA+ +LD D+  I  E G  +  +   Y    G  +
Sbjct: 113 MNTNQLTSIHADLCQLCLLAKCFKPALPYLDVDMMDICKENGAYDAKHFLCYYYYGGMIY 172

Query: 754 IRX*KL**SFVFL*SCXXCXGXVVXHIMLEAYKK 855
                   +  F           V HIMLE+YKK
Sbjct: 173 TGLKNFERALYFYEQAITTPAMAVSHIMLESYKK 206



 Score = 49.2 bits (112), Expect = 2e-05
 Identities = 25/44 (56%), Positives = 30/44 (68%)
 Frame = +3

Query: 246 LXAKSXXVLQXXXFHLNTVLETLDIQQHSLGVLAVLVAKFSLXS 377
           L  KS  +L     HL+TVL  LD+Q+HSLGVLAVL  KFS+ S
Sbjct: 7   LINKSGELLAKNLSHLDTVLGALDVQEHSLGVLAVLFVKFSMPS 50


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,714,908
Number of Sequences: 237096
Number of extensions: 1445827
Number of successful extensions: 2264
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2256
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11714809042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)