Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_H20
         (905 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g14250.1 68418.m01665 COP9 signalosome complex subunit 3 / CS...    72   6e-13

>At5g14250.1 68418.m01665 COP9 signalosome complex subunit 3 / CSN
           complex subunit 3 (CSN3) / FUSCA protein (FUS11) CSN3,
           FUS11; identical to COP9 signalosome subunit 3
           GI:14388969 [Arabidopsis thaliana]; identical to cDNA
           CSN complex subunit 3 (CSN3)  GI:18056656; contains Pfam
           profile PF01399: PCI domain
          Length = 429

 Score = 71.7 bits (168), Expect = 6e-13
 Identities = 30/86 (34%), Positives = 52/86 (60%)
 Frame = +1

Query: 427 FINNCNGEQVRFATDLYADLCHLLTNHLVEIKQPIRGLEILKKAIRKIQLFDSQLTSIHA 606
           FIN+C+  Q+R A+  +  LC +L +H++ +  P+RG+  L  A++K+Q+   +LT++H 
Sbjct: 89  FINSCDAGQIRLASYKFVSLCKILKDHVIALGDPLRGVGPLLNAVQKLQVSSKRLTALHP 148

Query: 607 DLCQLCLLSKCMXPAVEFLDTDVTGI 684
           D+ QLCL +K        L  D+  I
Sbjct: 149 DVLQLCLQAKSYKSGFSILSDDIVEI 174


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,883,443
Number of Sequences: 28952
Number of extensions: 206187
Number of successful extensions: 405
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2139598560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)