Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_H19
         (896 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g50230.1 68416.m05493 leucine-rich repeat transmembrane prote...    29   3.2  
At3g19830.1 68416.m02512 C2 domain-containing protein low simila...    29   3.2  
At3g20830.1 68416.m02634 protein kinase family protein contains ...    29   4.2  
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi...    29   4.2  
At5g48070.1 68418.m05939 xyloglucan:xyloglucosyl transferase, pu...    29   5.5  
At5g45050.2 68418.m05524 disease resistance protein-related simi...    29   5.5  
At5g45050.1 68418.m05523 disease resistance protein-related simi...    29   5.5  
At1g50260.1 68414.m05635 C2 domain-containing protein low simila...    28   7.3  
At3g50370.1 68416.m05508 expressed protein                             28   9.7  
At2g18920.1 68415.m02209 hypothetical protein                          28   9.7  
At1g65310.1 68414.m07406 xyloglucan:xyloglucosyl transferase, pu...    28   9.7  

>At3g50230.1 68416.m05493 leucine-rich repeat transmembrane protein
           kinase, putative receptor-like protein kinase (RKL1),
           Arabidopsis thaliana, EMBL:AF084034
          Length = 660

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +1

Query: 643 LVRSPVPTLPLTGYLSAFLPSGSVAL 720
           L+R    +LP T Y  +FLPS +VAL
Sbjct: 15  LLRISTASLPATNYFDSFLPSDAVAL 40


>At3g19830.1 68416.m02512 C2 domain-containing protein low
           similarity to GLUT4 vesicle protein [Rattus norvegicus]
           GI:4193489; contains Pfam profile PF00168: C2 domain
          Length = 666

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +1

Query: 490 KRPGTVKRPRCWRFSIGSAPLNEHHKNRRSSQR 588
           K+P  V+R    +FS+G  PL+  +  RR+S+R
Sbjct: 238 KKPDYVQRVEIKQFSLGDEPLSVRNVERRTSRR 270


>At3g20830.1 68416.m02634 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 408

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = -2

Query: 343 PIRKPPLPARWPIH*CRKNXP 281
           P   PP P R P H CRKN P
Sbjct: 384 PSSAPPSPLRSPPHVCRKNDP 404


>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
           PF00076 RNA recognition motif
          Length = 636

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -3

Query: 729 AMRKRHASRREKGGQVSGKRQGRNRRAHEGASRGK 625
           A R RH+ R  +GG+ S  R  R R +  GA RG+
Sbjct: 575 APRGRHSDRAPRGGRFS-DRAPRGRHSDRGAPRGR 608


>At5g48070.1 68418.m05939 xyloglucan:xyloglucosyl transferase,
           putative / xyloglucan endotransglycosylase, putative /
           endo-xyloglucan transferase, putative similar to
           xyloglucan endotransglycosylase TCH4 GI:886116 from
           [Arabidopsis thaliana]
          Length = 282

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 123 CVWXNHNSSCSXKNAFFVQ 179
           CVW N  SSCS  +++F Q
Sbjct: 226 CVWSNGKSSCSANSSWFTQ 244


>At5g45050.2 68418.m05524 disease resistance protein-related similar
            to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
            profiles PF03106: WRKY DNA -binding domain, PF00931:
            NB-ARC domain, PF00560: Leucine Rich Repeat
          Length = 1344

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 352  PLPRSLTRCARSFGCGERYQLTQRR 426
            P PRS  RCA S GC  R Q+ + R
Sbjct: 1169 PYPRSYYRCASSKGCFARKQVERSR 1193


>At5g45050.1 68418.m05523 disease resistance protein-related similar
            to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
            profiles PF03106: WRKY DNA -binding domain, PF00931:
            NB-ARC domain, PF00560: Leucine Rich Repeat
          Length = 1372

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 352  PLPRSLTRCARSFGCGERYQLTQRR 426
            P PRS  RCA S GC  R Q+ + R
Sbjct: 1197 PYPRSYYRCASSKGCFARKQVERSR 1221


>At1g50260.1 68414.m05635 C2 domain-containing protein low
           similarity to CLB1 [Lycopersicon esculentum] GI:2789434;
           contains Pfam profile PF00168: C2 domain
          Length = 675

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +1

Query: 490 KRPGTVKRPRCWRFSIGSAPLNEHHKNRRSSQR 588
           K+P  V+R    +FS+G  PL+  +  R++S+R
Sbjct: 226 KKPDYVQRVEIKQFSLGDEPLSVRNVERKTSRR 258


>At3g50370.1 68416.m05508 expressed protein
          Length = 2179

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 540 LRPPERASQKSTLKSEVAKPDRTIKIPGVS 629
           L PP+ + QK++ +SEV  P  +  I G++
Sbjct: 794 LPPPQESRQKTSFRSEVEHPGPSTSIGGIN 823


>At2g18920.1 68415.m02209 hypothetical protein
          Length = 135

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
 Frame = +1

Query: 442 QNQGITQERTCEQKASKRPGTVKRPRCWRFSIGSAP--LNEHHKNRRSSQRWRNPTGL*R 615
           QNQG+TQ R   Q +S+R    +R       I ++   + E+ + R     +++     R
Sbjct: 6   QNQGVTQTRNSVQTSSRRARQPRRRSIIESVIENSGNFITEYRERRGVVLLYQDVINALR 65

Query: 616 YQAFPPGSSLVRSPVPTLPLTGYLSAFL 699
               P  +   R+ V  L    Y SAF+
Sbjct: 66  RLDVPKRTPFWRAAVRCLAQANYASAFV 93


>At1g65310.1 68414.m07406 xyloglucan:xyloglucosyl transferase,
           putative / xyloglucan endotransglycosylase, putative /
           endo-xyloglucan transferase, putative similar to
           xyloglucan endotransglycosylase TCH4 GI:886116 from
           [Arabidopsis thaliana]
          Length = 282

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 123 CVWXNHNSSCSXKNAFFVQ 179
           CVW N  SSCS  + +F Q
Sbjct: 226 CVWANGKSSCSANSPWFTQ 244


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,569,132
Number of Sequences: 28952
Number of extensions: 303691
Number of successful extensions: 800
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2110422216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)