Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_H18
         (903 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.09c |||fumarylacetoacetate |Schizosaccharomyces pombe|c...    47   4e-06
SPCC1259.09c |||pyruvate dehydrogenase protein x component|Schiz...    27   2.8  
SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|ch...    26   6.4  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    26   6.4  

>SPBC21C3.09c |||fumarylacetoacetate |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 221

 Score = 46.8 bits (106), Expect = 4e-06
 Identities = 37/121 (30%), Positives = 55/121 (45%), Gaps = 6/121 (4%)
 Frame = +2

Query: 428 KILCIGLNYKDHCQEQNLTPPPVPMVFSKFSSTIIGPDQ-PVRIRTDVTKKVDWEVELCV 604
           K++CIG NY  H +E N   P  P  F K +S I+ P    + I  DV+    +EVEL +
Sbjct: 7   KVVCIGRNYAAHIRELNNPFPTKPFFFLKPTSAIVEPGHGNLIIPPDVS--AHYEVELGL 64

Query: 605 VVGREASC---VREEDALQHVAGYTVAQDISARDWQKEKNMGAVPAREVHGH--VLSAGP 769
           ++         V     L  +  Y V  D++AR+ Q E     +P     G+   L  GP
Sbjct: 65  IMKDRLPARRPVSSNSWLDSIGAYFVGIDMTARNIQNEAKKKGLPWSFAKGYDTFLPVGP 124

Query: 770 V 772
           +
Sbjct: 125 I 125


>SPCC1259.09c |||pyruvate dehydrogenase protein x
           component|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 456

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = +2

Query: 254 LEGDDIVDINKADSSLPTTLLQILRNGDLEKVKKLKSTKPA 376
           L+GD +  + K D  +P++L + +RN ++     ++  KP+
Sbjct: 198 LKGDVLAHVGKIDKGVPSSLQKFVRNLEVLDFSGVEPKKPS 238


>SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 204

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 15/52 (28%), Positives = 29/52 (55%)
 Frame = -3

Query: 352 LHFF*VSIPEYLEQSGRQTGVRLINIYNIISFQVAHTYIFWTIFV*KLN*LH 197
           L+ + + + E++   GR  G  L+   +I++++    YIF T+F   LN L+
Sbjct: 115 LYIYEIQLDEHIR--GRNVGKWLLKNASILAYRRNLKYIFLTVFSANLNALN 164


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 359 KSTKPATIPLSSVTLTAPIHGVDKILCIGLNYKDHC 466
           K   P + PL S+T   P H  DK   + +N ++ C
Sbjct: 185 KMPSPNSQPLQSITPNYPTHREDKFDLLIINIEEAC 220


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,227,954
Number of Sequences: 5004
Number of extensions: 60700
Number of successful extensions: 155
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)