Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_H18
         (903 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0111 + 17364496-17364612,17364741-17364915,17365847-173658...    52   8e-07
03_06_0540 - 34603979-34604094,34604173-34604290,34604394-346044...    50   3e-06
02_01_0724 - 5415218-5415280,5415398-5415523,5415614-5415710,541...    32   0.54 
06_03_1308 - 29221583-29221630,29221709-29221786,29221908-292219...    30   2.2  
01_07_0293 - 42567564-42567751,42567905-42567994,42569028-425691...    29   5.1  
12_01_0808 + 7418878-7420476                                           28   8.8  
12_01_0475 - 3722903-3723526,3724028-3724272,3725522-3725771           28   8.8  
07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988     28   8.8  
06_03_0458 - 20995834-20996004,20996404-20997309,20997778-209979...    28   8.8  
03_01_0202 + 1605703-1606402,1606681-1606824,1606911-1607063,160...    28   8.8  

>03_04_0111 +
           17364496-17364612,17364741-17364915,17365847-17365899,
           17372593-17372655,17372794-17372844,17372949-17373066,
           17373145-17373260
          Length = 230

 Score = 51.6 bits (118), Expect = 8e-07
 Identities = 32/104 (30%), Positives = 53/104 (50%), Gaps = 3/104 (2%)
 Frame = +2

Query: 428 KILCIGLNYKDHCQEQNLTPPPVPMVFSKFSSTIIGPD---QPVRIRTDVTKKVDWEVEL 598
           KI+ +G NY  H +E     P  P++F K +S+ +        + +   V + +  EVEL
Sbjct: 18  KIIGVGRNYVAHAKELGNPVPKEPLLFLKPTSSFLHAGVAGAAIEVPGPV-ESLHHEVEL 76

Query: 599 CVVVGREASCVREEDALQHVAGYTVAQDISARDWQKEKNMGAVP 730
            VV+ + A  V E  A+  V GY +A D++AR++Q       +P
Sbjct: 77  AVVLSQRARDVPEASAMDFVGGYALALDMTAREFQSAAKSAGLP 120


>03_06_0540 -
           34603979-34604094,34604173-34604290,34604394-34604444,
           34604829-34604891,34605312-34605364,34606084-34606258,
           34606375-34606479
          Length = 226

 Score = 50.0 bits (114), Expect = 3e-06
 Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 2/103 (1%)
 Frame = +2

Query: 428 KILCIGLNYKDHCQEQNLTPPPVPMVFSKFSSTII--GPDQPVRIRTDVTKKVDWEVELC 601
           KI+ +G N+  H +E     P  P++F K +S+ +  G         +  + +  EVEL 
Sbjct: 14  KIVGVGRNFVAHAKELGNPVPKEPVLFLKPTSSFLHAGVAGAAIEVPEPVESLHHEVELA 73

Query: 602 VVVGREASCVREEDALQHVAGYTVAQDISARDWQKEKNMGAVP 730
           VV+ + A  V E  A+  V GY +A D++AR+ Q       +P
Sbjct: 74  VVISQRARDVPEASAMDFVGGYALALDMTARELQSAAKSAGLP 116


>02_01_0724 -
           5415218-5415280,5415398-5415523,5415614-5415710,
           5415797-5415861,5415964-5416026,5416127-5416197,
           5416430-5416489,5416564-5416663,5416863-5416938,
           5417284-5417358,5417451-5417575,5417664-5417722,
           5418031-5418109,5418303-5418533
          Length = 429

 Score = 32.3 bits (70), Expect = 0.54
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = +2

Query: 569 TKKVDWEVELCVVVG---REASCVREEDALQHVAGYTVAQDISARDWQ 703
           +KK+D+E+E+  +VG        +   DA +H+ G  +  D SARD Q
Sbjct: 206 SKKLDFELEMAAIVGPGNELGKPIDINDAEEHIFGLMIMNDWSARDIQ 253


>06_03_1308 -
           29221583-29221630,29221709-29221786,29221908-29221952,
           29222075-29222187,29222283-29222406
          Length = 135

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = +2

Query: 482 TPPPVPMVFSKFSSTIIGPD--QPVRIRTDVTKKVDWEVELCVVVGREASCVREEDALQH 655
           TPPP P  FS    T+ G D  Q VRI+   + K       CV     A+C+R  +   +
Sbjct: 25  TPPPQPETFSNIPQTLSGGDGKQQVRIKRPKSAKALQCTSKCV-----ATCIRGGEGPLN 79

Query: 656 VAG 664
            +G
Sbjct: 80  ASG 82


>01_07_0293 -
           42567564-42567751,42567905-42567994,42569028-42569195,
           42569284-42569562,42569673-42569739
          Length = 263

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 660 PGTPSRRTSAPGTGRKRRTWGQFLLGKSM 746
           P + S + S P +G KRR  G FL  KS+
Sbjct: 51  PSSSSEKISTPSSGPKRRGRGSFLYDKSV 79


>12_01_0808 + 7418878-7420476
          Length = 532

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 657 WPGTPSRRTSAPGTGRKRRTWGQFLLGKSMDTFCP 761
           WPG      +A G   +RR  G  L GK++  + P
Sbjct: 61  WPGVTCSNVTAAGGEPRRRVVGVALAGKNLSGYIP 95


>12_01_0475 - 3722903-3723526,3724028-3724272,3725522-3725771
          Length = 372

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +2

Query: 455 KDHCQEQNLTPPPVPMVFSKFSSTIIGPDQPVRIRTDVTKKVDWEV 592
           +D CQ   LT P   + F+  S T+ GP + V +   V  +VD +V
Sbjct: 149 RDDCQ--TLTSPQASITFNDSSLTLTGPSRAVVLINPVMFEVDLKV 192


>07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988
          Length = 292

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 763 SGQNVSMDFPSRNCPHVLLFLPVPGAD 683
           SGQ +S  F SR+CP  L  +   G D
Sbjct: 20  SGQQLSATFYSRSCPRALAIIRAGGCD 46


>06_03_0458 -
           20995834-20996004,20996404-20997309,20997778-20997942,
           20998024-20998353,20998471-20998527,20998579-20998692,
           20999220-20999381,20999465-20999527,21001100-21001207,
           21001598-21001675,21001771-21001902
          Length = 761

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 25/91 (27%), Positives = 39/91 (42%)
 Frame = +2

Query: 191 RNMKLVQFSYKDSPKNIRVGYLEGDDIVDINKADSSLPTTLLQILRNGDLEKVKKLKSTK 370
           R++K    S   SP + +       +I D + A    P +L     NG+LE+   L S  
Sbjct: 544 RSVKRASISPSISPVHQKTSSPPSGNIADASGASGGSPVSLA----NGNLEQANCLNSPL 599

Query: 371 PATIPLSSVTLTAPIHGVDKILCIGLNYKDH 463
            +   L SVT  +   GV+ + C     K+H
Sbjct: 600 ASEKSLDSVTSGSKCVGVEAV-CPSDATKEH 629


>03_01_0202 +
           1605703-1606402,1606681-1606824,1606911-1607063,
           1607236-1607351,1607737-1607904,1607990-1608214,
           1608711-1608833
          Length = 542

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 230 PKNIRVGYLEGDDIVDINKADSSLP 304
           P+   VGY++GD  +D+ K D + P
Sbjct: 19  PREHAVGYVQGDSYLDLKKFDDTWP 43


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,835,308
Number of Sequences: 37544
Number of extensions: 411374
Number of successful extensions: 1218
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1217
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)