Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_H18
(903 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37341| Best HMM Match : FAA_hydrolase (HMM E-Value=3.3e-08) 70 2e-12
SB_13922| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 4e-04
SB_35947| Best HMM Match : IQ (HMM E-Value=0.00061) 36 0.045
SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0) 33 0.24
SB_57443| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.96
SB_23752| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_39561| Best HMM Match : ELMO_CED12 (HMM E-Value=2.52234e-44) 30 2.9
SB_51152| Best HMM Match : Rep-A_N (HMM E-Value=0.049) 29 5.1
SB_21752| Best HMM Match : Death (HMM E-Value=7.1e-05) 29 5.1
SB_18135| Best HMM Match : Cytochrom_B561 (HMM E-Value=0.5) 29 5.1
SB_18710| Best HMM Match : Glycophorin_A (HMM E-Value=0.42) 29 5.1
SB_22801| Best HMM Match : Dynein_heavy (HMM E-Value=1.5e-14) 29 6.8
SB_41028| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_14427| Best HMM Match : Cadherin (HMM E-Value=0) 28 9.0
>SB_37341| Best HMM Match : FAA_hydrolase (HMM E-Value=3.3e-08)
Length = 223
Score = 70.1 bits (164), Expect = 2e-12
Identities = 29/65 (44%), Positives = 41/65 (63%)
Frame = +2
Query: 389 SSVTLTAPIHGVDKILCIGLNYKDHCQEQNLTPPPVPMVFSKFSSTIIGPDQPVRIRTDV 568
S++ L API+ +KI+C G+NY DHC EQN+ P P++FSKF+S I P P+ T+
Sbjct: 16 SNLKLKAPIYNPEKIICTGMNYADHCYEQNMPIPTEPVIFSKFASAIAAPGDPIPYGTET 75
Query: 569 TKKVD 583
D
Sbjct: 76 EVSCD 80
Score = 51.2 bits (117), Expect = 1e-06
Identities = 21/29 (72%), Positives = 25/29 (86%)
Frame = +2
Query: 635 EEDALQHVAGYTVAQDISARDWQKEKNMG 721
EEDA+ +VAGYTVA D+SARDWQ +KN G
Sbjct: 169 EEDAMDYVAGYTVAHDVSARDWQLKKNAG 197
Score = 35.1 bits (77), Expect = 0.078
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = +3
Query: 708 RRTWGQFLLGKSMDTFCPLGPCVLTSD 788
++ GQ+LLGK+ D + PLGP ++T D
Sbjct: 193 KKNAGQWLLGKTGDAYLPLGPAIVTKD 219
>SB_13922| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1012
Score = 42.7 bits (96), Expect = 4e-04
Identities = 19/41 (46%), Positives = 29/41 (70%)
Frame = +2
Query: 587 EVELCVVVGREASCVREEDALQHVAGYTVAQDISARDWQKE 709
EVEL VV+G++ + + EE A+ HV GY +A D++ R Q+E
Sbjct: 882 EVELGVVIGQKGANINEEAAMDHVGGYALALDMTDRTLQEE 922
>SB_35947| Best HMM Match : IQ (HMM E-Value=0.00061)
Length = 1060
Score = 35.9 bits (79), Expect = 0.045
Identities = 32/91 (35%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Frame = +2
Query: 362 STKPATIPLSSVTLTAPIHGVDKILC----IGLNYKDHCQEQNLTPP-PVPMVFSKFSST 526
S K P SSVT T P G +L G + K+ E+ +PP P +V +S
Sbjct: 68 SKKSGLAPASSVTATTPAPGKATVLSPSPYYGADLKEATSEEKPSPPTPGTLVAEPYSWK 127
Query: 527 IIGPDQPV-RIRTDVTKKVDWEVELCVVVGR 616
+ QPV RIRT TK LC+ GR
Sbjct: 128 SLVTGQPVLRIRTTGTK----AAVLCLPAGR 154
>SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0)
Length = 672
Score = 33.5 bits (73), Expect = 0.24
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Frame = +2
Query: 485 PPPVPMVFSKFSSTIIGPDQPVRIRTDVT--KKVDWEVELCVVVGREASCVREEDALQHV 658
PP +P + + GP P +T ++ +WE V G E ++E + V
Sbjct: 139 PPIIPQAINSMPMPMAGPSVPTVPVPTITPAEQKEWESAYSHVEGDEKEKKKKEKKIVRV 198
Query: 659 AGYTVAQDISARDW 700
AG V +D S W
Sbjct: 199 AGGQVWEDASLAQW 212
>SB_57443| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1007
Score = 31.5 bits (68), Expect = 0.96
Identities = 19/88 (21%), Positives = 43/88 (48%)
Frame = +2
Query: 341 EKVKKLKSTKPATIPLSSVTLTAPIHGVDKILCIGLNYKDHCQEQNLTPPPVPMVFSKFS 520
++ + +T+P++ S+ LT + G D + G N++ C E N P + S +
Sbjct: 521 QRARYTSTTRPSSASSKSLLLTTLLLGGDIQINPGPNWRHPCGECN--KPKTKCIASWLT 578
Query: 521 STIIGPDQPVRIRTDVTKKVDWEVELCV 604
+ + G +PV + +T+ + ++ C+
Sbjct: 579 ALVFGYARPVASQAFLTRYLKKSLDCCL 606
>SB_23752| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 620
Score = 31.1 bits (67), Expect = 1.3
Identities = 19/64 (29%), Positives = 28/64 (43%)
Frame = +2
Query: 302 PTTLLQILRNGDLEKVKKLKSTKPATIPLSSVTLTAPIHGVDKILCIGLNYKDHCQEQNL 481
PTT L +L L+ K+ + K +PL + T P +L +GL+ Q
Sbjct: 428 PTTSLDLLGQEFLQNQKQQQKHKQVVLPLPPASATPPPSSDGALLDLGLDPVPSAPTQAP 487
Query: 482 TPPP 493
TP P
Sbjct: 488 TPTP 491
>SB_39561| Best HMM Match : ELMO_CED12 (HMM E-Value=2.52234e-44)
Length = 520
Score = 29.9 bits (64), Expect = 2.9
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -2
Query: 842 GTPLSEQDTXSXXGRAHLVARQHARAQRTERVHGLPEQE 726
G P S+Q + G +L + A TER G+P++E
Sbjct: 147 GVPTSKQSSCEGQGTTNLTLSSDSDASVTERAQGVPDRE 185
>SB_51152| Best HMM Match : Rep-A_N (HMM E-Value=0.049)
Length = 812
Score = 29.1 bits (62), Expect = 5.1
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = +2
Query: 140 NRHFS*IQLD-VFLVTKTRNMKLVQFSYKDSPKNIRVGYLEGDDIVDINKADSSLPTTLL 316
++ + +++D VF +TK +++ Y S +N YL D I++ +LPT
Sbjct: 209 DKFYQMLEVDKVFYITKG-SLRTANKQYS-SIRNDYEMYLNNDTIIEPCNETCNLPTLQY 266
Query: 317 QILRNGDLEKVKK 355
+ GDLE + K
Sbjct: 267 NFVNIGDLENINK 279
>SB_21752| Best HMM Match : Death (HMM E-Value=7.1e-05)
Length = 281
Score = 29.1 bits (62), Expect = 5.1
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +2
Query: 380 IPLSSVTLTAPIHGVDKILCIGLNYKDHCQEQNL 481
+PL + P+ +DK+ C+ + YK+ C Q+L
Sbjct: 4 VPLQKIVENRPL--LDKLRCLDIEYKEKCNWQHL 35
>SB_18135| Best HMM Match : Cytochrom_B561 (HMM E-Value=0.5)
Length = 1595
Score = 29.1 bits (62), Expect = 5.1
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +1
Query: 316 PNTQEWRLRKSEEVEINKTSNYTTIISHSNCTHTWCR*NP 435
PN + + V ++ + TT++ H CTH R NP
Sbjct: 1465 PNVSRYATTRCVMVRVHISRYVTTLMCHGTCTHIKIRDNP 1504
>SB_18710| Best HMM Match : Glycophorin_A (HMM E-Value=0.42)
Length = 1451
Score = 29.1 bits (62), Expect = 5.1
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = -3
Query: 568 NISSDPNRLIRSNDGA*KFTE--HHRH 494
NIS+DP R ++ N G K T HH+H
Sbjct: 319 NISNDPGRALKQNTGEEKKTSNGHHKH 345
Score = 29.1 bits (62), Expect = 5.1
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = -3
Query: 568 NISSDPNRLIRSNDGA*KFTE--HHRH 494
NIS+DP R ++ N G K T HH+H
Sbjct: 1287 NISNDPGRALKQNTGEEKKTSNVHHKH 1313
Score = 28.3 bits (60), Expect = 9.0
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = -3
Query: 568 NISSDPNRLIRSNDGA*KFTE--HHRH 494
NIS+DP R + N G K T HH+H
Sbjct: 836 NISNDPGRAFKQNTGEEKKTSNGHHKH 862
>SB_22801| Best HMM Match : Dynein_heavy (HMM E-Value=1.5e-14)
Length = 478
Score = 28.7 bits (61), Expect = 6.8
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = -1
Query: 438 QRILSTPCMGAVRVTDDSGIVAGFVDFNFFTFSKSPFLSIWSKV 307
QRI+S+ + ++V S +VA D ++ SP L++W K+
Sbjct: 254 QRIISSQVISQLKVLMRSDVVAHKFDKEKWSTELSPILNLWKKL 297
>SB_41028| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 798
Score = 28.3 bits (60), Expect = 9.0
Identities = 13/52 (25%), Positives = 24/52 (46%)
Frame = +1
Query: 340 RKSEEVEINKTSNYTTIISHSNCTHTWCR*NPLYRLELQGSLPRAESHPTSC 495
RK+ E+ + T+++ +C TW R +E ++ RA+ T C
Sbjct: 732 RKASEIRTGSNPSPTSVLVCRSCGRTWLRALGFLVMERNANVHRADVMDTDC 783
>SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 2325
Score = 28.3 bits (60), Expect = 9.0
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +2
Query: 266 DIVDINKADSSLPTTLLQILRNGD-LEKVKKLKSTKP 373
D+ D+N++ +++ + LQIL N L KV LK T P
Sbjct: 248 DVSDVNESPTAISISSLQILENRPALTKVGDLKVTDP 284
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,718,344
Number of Sequences: 59808
Number of extensions: 476308
Number of successful extensions: 1197
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1196
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2597949818
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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