Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_H18
(903 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L16621-5|AAA28230.1| 214|Caenorhabditis elegans Hypothetical pr... 80 2e-15
Z81555-1|CAB04516.1| 242|Caenorhabditis elegans Hypothetical pr... 30 2.6
Z93378-5|CAB07584.3| 1229|Caenorhabditis elegans Hypothetical pr... 29 6.0
Z68752-11|CAM82780.1| 324|Caenorhabditis elegans Hypothetical p... 29 6.0
Z68752-10|CAA92986.1| 354|Caenorhabditis elegans Hypothetical p... 29 6.0
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p... 29 6.0
U40955-6|AAA81754.1| 539|Caenorhabditis elegans Hypothetical pr... 29 6.0
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr... 29 6.0
AL023840-2|CAM82781.1| 324|Caenorhabditis elegans Hypothetical ... 29 6.0
AL023840-1|CAA19510.1| 354|Caenorhabditis elegans Hypothetical ... 29 6.0
AJ811574-1|CAH18872.1| 1229|Caenorhabditis elegans putative treh... 29 6.0
AJ512333-1|CAD54507.2| 1230|Caenorhabditis elegans trehalose-6-p... 29 6.0
AF025471-5|AAB71064.2| 334|Caenorhabditis elegans Serpentine re... 28 7.9
>L16621-5|AAA28230.1| 214|Caenorhabditis elegans Hypothetical
protein ZK688.3 protein.
Length = 214
Score = 79.8 bits (188), Expect = 2e-15
Identities = 39/101 (38%), Positives = 60/101 (59%)
Frame = +2
Query: 428 KILCIGLNYKDHCQEQNLTPPPVPMVFSKFSSTIIGPDQPVRIRTDVTKKVDWEVELCVV 607
KI+C+G NYKDH E P PM+F K ++ I +P+ + + + EVEL VV
Sbjct: 13 KIVCVGRNYKDHALELGNAIPKKPMLFVKTVNSFIVEGEPI-VAPPGCQNLHQEVELGVV 71
Query: 608 VGREASCVREEDALQHVAGYTVAQDISARDWQKEKNMGAVP 730
+ ++AS + + DA+ ++ GYTVA D++ARD+Q E P
Sbjct: 72 ISKKASRISKSDAMDYIGGYTVALDMTARDFQDEAKKAGAP 112
>Z81555-1|CAB04516.1| 242|Caenorhabditis elegans Hypothetical
protein F58E10.5 protein.
Length = 242
Score = 29.9 bits (64), Expect = 2.6
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +1
Query: 286 GGLQFADHFAPNTQEWRLRKSEEVEINKTSNYTTIISHSNCTHTWCR*NPLYRLELQG 459
GG F A QEW+ + + NK +T+ +S+C++ CR L+R QG
Sbjct: 143 GGFNFFP--AQEVQEWK--PARKASKNKIKKISTMHINSSCSNCGCRETKLWRRNEQG 196
>Z93378-5|CAB07584.3| 1229|Caenorhabditis elegans Hypothetical
protein F19H8.1 protein.
Length = 1229
Score = 28.7 bits (61), Expect = 6.0
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +1
Query: 331 WRLRKSEEVEINKTSNYTTIIS--HSNCTHTWCR*NPLYRLELQGSL 465
W L E+E KT++ T+IS + T W R +P L L+G L
Sbjct: 35 WHLLDLLEIEYKKTADLHTLISSVSESLTMVWKRRDPKSELALKGLL 81
>Z68752-11|CAM82780.1| 324|Caenorhabditis elegans Hypothetical
protein T12G3.7b protein.
Length = 324
Score = 28.7 bits (61), Expect = 6.0
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Frame = +2
Query: 449 NYKDHCQEQNLTPPPVPMVFSKFSSTIIGPDQ--PVRIRTDVT---KKVDWEVELCVVVG 613
N K+ + T PP + S ++ I PDQ P+ + T+ T K + E + ++ G
Sbjct: 44 NEKEGKSSEKSTTPPTLTLLSSTANLTIAPDQVAPIPVATNATIIESKTENEKKEELLTG 103
Query: 614 REASCVREEDALQHVAGYTV 673
+E + + D +Q V
Sbjct: 104 KEETPPAKTDVIQEATTVVV 123
>Z68752-10|CAA92986.1| 354|Caenorhabditis elegans Hypothetical
protein T12G3.7a protein.
Length = 354
Score = 28.7 bits (61), Expect = 6.0
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Frame = +2
Query: 449 NYKDHCQEQNLTPPPVPMVFSKFSSTIIGPDQ--PVRIRTDVT---KKVDWEVELCVVVG 613
N K+ + T PP + S ++ I PDQ P+ + T+ T K + E + ++ G
Sbjct: 74 NEKEGKSSEKSTTPPTLTLLSSTANLTIAPDQVAPIPVATNATIIESKTENEKKEELLTG 133
Query: 614 REASCVREEDALQHVAGYTV 673
+E + + D +Q V
Sbjct: 134 KEETPPAKTDVIQEATTVVV 153
>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
protein 44, isoform f protein.
Length = 6994
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 608 VGREASCVREEDALQHVAGYTVAQDISARDWQKEKNMGAVPAR-EVHGHV 754
V R+ S ED+++HV T ++ ++ E + VP+ +VHG V
Sbjct: 4728 VQRDESPAPSEDSVKHVIEKTTTTTVTEERYEPEDSHSPVPSEDDVHGFV 4777
>U40955-6|AAA81754.1| 539|Caenorhabditis elegans Hypothetical
protein F48B9.1 protein.
Length = 539
Score = 28.7 bits (61), Expect = 6.0
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +2
Query: 608 VGREASCVREEDALQHVAGYTVAQDISARDWQKEKN 715
VG ++++L++V G+ V Q +++ W +EKN
Sbjct: 198 VGNIDQLRHDDNSLRNVGGHRVRQRVASVSWNREKN 233
>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
protein.
Length = 6994
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 608 VGREASCVREEDALQHVAGYTVAQDISARDWQKEKNMGAVPAR-EVHGHV 754
V R+ S ED+++HV T ++ ++ E + VP+ +VHG V
Sbjct: 4728 VQRDESPAPSEDSVKHVIEKTTTTTVTEERYEPEDSHSPVPSEDDVHGFV 4777
>AL023840-2|CAM82781.1| 324|Caenorhabditis elegans Hypothetical
protein T12G3.7b protein.
Length = 324
Score = 28.7 bits (61), Expect = 6.0
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Frame = +2
Query: 449 NYKDHCQEQNLTPPPVPMVFSKFSSTIIGPDQ--PVRIRTDVT---KKVDWEVELCVVVG 613
N K+ + T PP + S ++ I PDQ P+ + T+ T K + E + ++ G
Sbjct: 44 NEKEGKSSEKSTTPPTLTLLSSTANLTIAPDQVAPIPVATNATIIESKTENEKKEELLTG 103
Query: 614 REASCVREEDALQHVAGYTV 673
+E + + D +Q V
Sbjct: 104 KEETPPAKTDVIQEATTVVV 123
>AL023840-1|CAA19510.1| 354|Caenorhabditis elegans Hypothetical
protein T12G3.7a protein.
Length = 354
Score = 28.7 bits (61), Expect = 6.0
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Frame = +2
Query: 449 NYKDHCQEQNLTPPPVPMVFSKFSSTIIGPDQ--PVRIRTDVT---KKVDWEVELCVVVG 613
N K+ + T PP + S ++ I PDQ P+ + T+ T K + E + ++ G
Sbjct: 74 NEKEGKSSEKSTTPPTLTLLSSTANLTIAPDQVAPIPVATNATIIESKTENEKKEELLTG 133
Query: 614 REASCVREEDALQHVAGYTV 673
+E + + D +Q V
Sbjct: 134 KEETPPAKTDVIQEATTVVV 153
>AJ811574-1|CAH18872.1| 1229|Caenorhabditis elegans putative
trehalose 6-phosphatesynthase protein.
Length = 1229
Score = 28.7 bits (61), Expect = 6.0
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +1
Query: 331 WRLRKSEEVEINKTSNYTTIIS--HSNCTHTWCR*NPLYRLELQGSL 465
W L E+E KT++ T+IS + T W R +P L L+G L
Sbjct: 35 WHLLDLLEIEYKKTADLHTLISSVSESLTMVWKRRDPKSELALKGLL 81
>AJ512333-1|CAD54507.2| 1230|Caenorhabditis elegans
trehalose-6-phosphate synthase protein.
Length = 1230
Score = 28.7 bits (61), Expect = 6.0
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +1
Query: 331 WRLRKSEEVEINKTSNYTTIIS--HSNCTHTWCR*NPLYRLELQGSL 465
W L E+E KT++ T+IS + T W R +P L L+G L
Sbjct: 35 WHLLDLLEIEYKKTADLHTLISSVSESLTMVWKRRDPKSELALKGLL 81
>AF025471-5|AAB71064.2| 334|Caenorhabditis elegans Serpentine
receptor, class h protein195 protein.
Length = 334
Score = 28.3 bits (60), Expect = 7.9
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -1
Query: 231 GLSLYEN*TN-FMFLVLVTRKTSNCIQEKCLFY*HFSIICDFS*K 100
GLS Y N F F++++ T+ I +F F IIC FS K
Sbjct: 86 GLSKYTNVPEVFQFMIVIDFATNMAISIDSIFENRFYIICTFSWK 130
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,283,171
Number of Sequences: 27780
Number of extensions: 357721
Number of successful extensions: 984
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 983
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -