Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_H17
(885 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29A4.17c |||FUN14 family protein|Schizosaccharomyces pombe|c... 27 2.7
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 27 3.6
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 4.7
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb... 27 4.7
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 6.2
SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit Alp... 26 8.2
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac... 26 8.2
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 8.2
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 26 8.2
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 26 8.2
>SPAC29A4.17c |||FUN14 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 147
Score = 27.5 bits (58), Expect = 2.7
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -2
Query: 188 CNTLICTKNSLNSSGTVRINFRVFSSQVTAATRQ 87
C+ + T +NS G +RIN+ QV T Q
Sbjct: 68 CSAVFATIAYINSKGLIRINWPQLQQQVIGPTEQ 101
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 27.1 bits (57), Expect = 3.6
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = +2
Query: 104 LPAKKIPENLYELCLTNLVNFWYKSKCYKKVLRLLPDTV 220
LP+K + ++ + L+NLVN W K+ + +++L D +
Sbjct: 239 LPSKVLSDSEFYKSLSNLVNVWLKTT--RSLIKLFHDQI 275
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 26.6 bits (56), Expect = 4.7
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = -1
Query: 801 SSDXSPSLXHGFVMSPSVCEXTSQVSATLNEHSGSSATSSVMPNSFKASEYVSAAA 634
SS S SL ++ S T+ S T + + SSATSS + +S S +++++
Sbjct: 78 SSAASSSLTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSLASSSTTSSSLASSS 133
>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 26.6 bits (56), Expect = 4.7
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = -1
Query: 801 SSDXSPSLXHGFVMSPSVCEXTSQVSATLNEHSGSSATSSVMPNSFKASEYVSAAAGK 628
SS +PS S S ++ +S+++ SSA+SSV +S +S +S+A K
Sbjct: 144 SSTATPS-SSSTTSSSSSSSSSTPISSSITSSISSSASSSVSSSSASSSGSISSADAK 200
>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 547
Score = 26.2 bits (55), Expect = 6.2
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -1
Query: 645 SAAAGKQQYADCVFNNLXQHSRVSLL*YVDCG 550
+A G A ++NNL H SLL +V CG
Sbjct: 491 AAGGGMTIVARPMYNNLNYHWATSLLAFVGCG 522
>SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit
Alp13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 25.8 bits (54), Expect = 8.2
Identities = 9/34 (26%), Positives = 21/34 (61%)
Frame = +2
Query: 134 YELCLTNLVNFWYKSKCYKKVLRLLPDTVVMDVY 235
+ CL N++ + ++ + Y ++ + PDT + D+Y
Sbjct: 239 FNKCLGNMLLYRFERQQYLEIRQQYPDTEMCDLY 272
>SPBC365.07c |||TATA element modulatory factor homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 25.8 bits (54), Expect = 8.2
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -3
Query: 538 EAPALEEDGLRVRVPPGFVQESTEPQPELYQRVPRSDVRIALLN 407
EA ++D + P + S +P P + +P+SD R AL N
Sbjct: 317 EALENDKDNYFDDLHPLNISTSPQPSPLSFSEIPQSDTRNALEN 360
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 25.8 bits (54), Expect = 8.2
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = +1
Query: 133 IRTVPDEFSEFLVQIKVLQKGLAFTSRYSGHGRLLQDAAGEEV 261
I ++PD FS+ V + V + + LLQD A + +
Sbjct: 589 IDSIPDSFSDSAVDLPVDSSKYTLVGKTQSNSNLLQDNAEKHI 631
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.8 bits (54), Expect = 8.2
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = -1
Query: 801 SSDXSPSLXHGFVMSPSVCEXTSQVSATLNEHSGSSATSSVMPNSFKA 658
SS PS F+ + S S V+ T + S SS+TSS +P+S A
Sbjct: 229 SSSSRPSSSSSFITTMSSSTFISTVTVTPS--SSSSSTSSEVPSSTAA 274
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 25.8 bits (54), Expect = 8.2
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -1
Query: 801 SSDXSPSLXHGFVMSPSVCEXTSQVSATLNEHSGSSATSS 682
+ + SPS H F + + Q S + N S SS++SS
Sbjct: 102 ADEPSPSFNHSFFEKDNARDIPQQPSHSQNPSSSSSSSSS 141
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,134,866
Number of Sequences: 5004
Number of extensions: 60851
Number of successful extensions: 230
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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