Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_H17
         (885 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0775 - 36174098-36174204,36174540-36174594,36174690-361747...    31   1.6  
03_01_0239 + 1859446-1860112,1861218-1861338,1861431-1861618,186...    29   3.8  
02_05_0902 + 32620668-32621209,32621847-32622258,32622471-326226...    29   5.0  
02_04_0215 - 20983210-20983293,20983440-20983512,20984072-209841...    29   6.6  
01_01_1125 - 8920590-8924372                                           29   6.6  

>03_06_0775 -
           36174098-36174204,36174540-36174594,36174690-36174741,
           36174947-36175028,36175110-36175204,36175339-36175727
          Length = 259

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
 Frame = +2

Query: 146 LTNLVNFWYKS---KCYKKVLRLL-PDTVVMD-VYYKMLQEKKLCILHTELSELDVFERL 310
           L +++  +Y S   K  K++  L+ PD ++ D  YYK+L  K L +LH+ +++L   +RL
Sbjct: 76  LPDVIQQFYSSLNEKDSKRLENLIAPDCIIDDNAYYKLLDIKVLLVLHSHITDL---QRL 132

Query: 311 LRFAGCQLK 337
           +   G   K
Sbjct: 133 MDAMGKNFK 141


>03_01_0239 +
           1859446-1860112,1861218-1861338,1861431-1861618,
           1861710-1861804
          Length = 356

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 26/110 (23%), Positives = 45/110 (40%)
 Frame = -2

Query: 404 KRSLVRLTASNSVL*LPGSTRGVSAGNLRTATASRRHPTLIAPCVKYTTSSPAASCNKRP 225
           + S+   +A ++++ LP  T G +AGN    + S     L    V+         CN   
Sbjct: 225 RSSISDTSADHNLMLLPDGTYGFTAGNCIRCSCSSTTYQLNCTAVQNKGCPSVPLCNG-- 282

Query: 224 *PLYLEVNARPFCNTLICTKNSLNSSGTVRINFRVFSSQVTAATRQPSWR 75
             L L       C +  C  +  ++S ++ I   + ++Q TA  R  S R
Sbjct: 283 -TLKLGETNGTGCGSTTCAYSGYSNSSSLIIQTSLATNQTTACQRGGSGR 331


>02_05_0902 +
           32620668-32621209,32621847-32622258,32622471-32622675,
           32622712-32622806,32622945-32623557,32623652-32623820,
           32624392-32624749,32625226-32625336,32626207-32626561,
           32627262-32627484,32627837-32628058,32628628-32628781
          Length = 1152

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = +2

Query: 227 DVYYKMLQEKKLCILHTELSELDVFERLLRF---AGCQLKLLECFQAVIE 367
           D  Y  L+ K   ++H EL  +D+F  L RF    G +      FQA IE
Sbjct: 419 DTQYDRLEPKYSSLIHLELGLVDIFVNLCRFEWHTGHRELATALFQAQIE 468


>02_04_0215 -
           20983210-20983293,20983440-20983512,20984072-20984159,
           20984232-20984388,20984472-20984575,20985045-20985119,
           20985144-20985213
          Length = 216

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
 Frame = +2

Query: 365 EHCSKLSTELATA-YVEKCNANVRSRNSLIQLGLRLGGFLNEAGWYADAQTVLLKCRSLC 541
           ++ S L   L+T  ++E  + NV S+  LI+     G       +Y D + +    R L 
Sbjct: 100 KYVSALLLSLSTMLHMELPHINVLSKIDLIE---NYGNLAFNLNFYTDVEDLSYLQRHLD 156

Query: 542 QAQPQSTYYKRLTLECC 592
           Q  P+S  Y++LT E C
Sbjct: 157 Q-DPRSAKYRKLTKELC 172


>01_01_1125 - 8920590-8924372
          Length = 1260

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +2

Query: 266 ILHTELSELDVFERLLRFAGCQLKLLECFQAVIEHCSKLSTELATAYVEKC 418
           IL  + SE+D+F  L  +A   L   +C+Q  ++    L  +  T   + C
Sbjct: 742 ILKVDGSEIDLFSSLCNYASAFLSTRDCYQGALDVYKLLRMKSFTVTSKTC 792


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,095,953
Number of Sequences: 37544
Number of extensions: 454595
Number of successful extensions: 1474
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1474
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)