Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_H17
         (885 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8454| Best HMM Match : ATP1G1_PLM_MAT8 (HMM E-Value=6.5)           103   3e-22
SB_58829| Best HMM Match : HC2 (HMM E-Value=5.8)                       31   1.2  
SB_39964| Best HMM Match : RA (HMM E-Value=0.00072)                    31   1.6  
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.9  
SB_23042| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  
SB_6450| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.7  

>SB_8454| Best HMM Match : ATP1G1_PLM_MAT8 (HMM E-Value=6.5)
          Length = 321

 Score =  103 bits (246), Expect = 3e-22
 Identities = 65/214 (30%), Positives = 107/214 (50%), Gaps = 6/214 (2%)
 Frame = +2

Query: 110 AKKIPENLYELCLTNLVNFWYKSKCYKKVLRLLPDTVVMDVYYKMLQEKKLCILHTELSE 289
           A+K   +LY L ++  V      + + +  R LPDTV  DVYY++ +      L  E+  
Sbjct: 2   AEKEVGSLYNLAISQAVRL---HRLFTREYRHLPDTVQCDVYYELYKSGNFVTLAEEVRN 58

Query: 290 LDVFERLLRFAGCQLKLLECFQAVIEHCSKLSTELATAYVEKCNANVR----SRN--SLI 451
           +DVF + LR    ++KL   FQ +++    L  ELA  +  +C A+ R    SR+  +L+
Sbjct: 59  IDVFAKALRAGTRRIKLYRPFQELVDEGYNLPQELAIEFRCRCKASQRQGSHSRDYEALL 118

Query: 452 QLGLRLGGFLNEAGWYADAQTVLLKCRSLCQAQPQSTYYKRLTLECCXRLLNTQSAYCCF 631
            +G  +GGFL+E GW   A+ +   C SLC  +       ++ L+C  RLL+ ++ YC F
Sbjct: 119 SIGWLVGGFLSETGWDLAAEQISEDCLSLCDVRKIGDC--KIALKCVTRLLHVRTGYCKF 176

Query: 632 PAAAETYSLALKLLGITEDVAELPECSFSVAETC 733
             A  T+  A++L+    +  E    +    E C
Sbjct: 177 AEARHTFDFAMELVQKLRNKGEKVNTAMLYGERC 210


>SB_58829| Best HMM Match : HC2 (HMM E-Value=5.8)
          Length = 959

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +2

Query: 143  CLTNLVNFWYKSKCYK-KVLRLLPDTVVMDVYYKMLQEKKLCILHTELSELDVFERLLR 316
            C T L+   + +KC+  K++R  P TVVM +  K    K  C L  E   L    RL R
Sbjct: 889  CHTTLLKQVHHNKCHTIKMVREFPTTVVMKMMTKSPASKATCALLREERTLCSLARLSR 947


>SB_39964| Best HMM Match : RA (HMM E-Value=0.00072)
          Length = 349

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +2

Query: 182 CYKKVLRLLPDTVVMDVYYKMLQEKKLCILHTELSELDVFERLLR 316
           C K+ L+ L +TV +DVY     +  L +L T+ ++ DV E  +R
Sbjct: 42  CQKETLQALSETVTLDVYLMNGSKVSLKVLSTDSTD-DVLEAAMR 85


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 21/60 (35%), Positives = 28/60 (46%)
 Frame = -1

Query: 753  SVCEXTSQVSATLNEHSGSSATSSVMPNSFKASEYVSAAAGKQQYADCVFNNLXQHSRVS 574
            S C        T +  +G SAT++  P+S   S YV++A GK   A      L   SRVS
Sbjct: 972  SSCTTPPSSDTTNSSSAGPSATNNASPSS---SPYVASAPGKDSSASANSWYLLNDSRVS 1028


>SB_23042| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 280

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 13/51 (25%), Positives = 27/51 (52%)
 Frame = +2

Query: 293 DVFERLLRFAGCQLKLLECFQAVIEHCSKLSTELATAYVEKCNANVRSRNS 445
           D+ ER ++     L  +E +   +E C++ S ++ + + +KC  N RS  +
Sbjct: 45  DIAERHIQLHPYGLATVEGWDKWLERCTEESKKMLSRFEKKCKENKRSEQN 95


>SB_6450| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 692

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 1/105 (0%)
 Frame = -2

Query: 545 PDRGSCT*GGRSARPRT-TRLRSRIHRASTRAVSESS*I*RSHCTSQRKRSLVRLTASNS 369
           P + S   G      RT + ++S  H +S+ + SESS       T    RS   L  + S
Sbjct: 161 PLKASANLGAGQTSGRTPSPVKSPGHSSSSLS-SESSPKHSPSATPSTTRSKASLGKATS 219

Query: 368 VL*LPGSTRGVSAGNLRTATASRRHPTLIAPCVKYTTSSPAASCN 234
              L  ++R  S+GNL   T++    +  +    ++  S A SC+
Sbjct: 220 TTNLDSASRRSSSGNLLRPTSASNSKSRPSSLYNHSRPSTAKSCD 264


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,572,900
Number of Sequences: 59808
Number of extensions: 493415
Number of successful extensions: 1435
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1425
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2526446612
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)