Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_H17
         (885 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g09000.1 68416.m01053 proline-rich family protein                   29   3.1  
At2g26780.1 68415.m03212 expressed protein contains Pfam profile...    29   5.4  
At2g20770.1 68415.m02441 lanthionine synthetase C-like family pr...    28   7.2  
At1g52970.1 68414.m05992 hypothetical protein                          28   7.2  
At5g37830.1 68418.m04555 hydantoinase/oxoprolinase family protei...    28   9.5  
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID...    28   9.5  

>At3g09000.1 68416.m01053 proline-rich family protein
          Length = 541

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 36/114 (31%), Positives = 51/114 (44%)
 Frame = -2

Query: 566 STSTAAVPDRGSCT*GGRSARPRTTRLRSRIHRASTRAVSESS*I*RSHCTSQRKRSLVR 387
           STS  A P R S T    ++RP TTR  +   R+ST              TS+   +  R
Sbjct: 155 STSRPATPTRRSTTPTTSTSRPVTTRASN--SRSSTP-------------TSRATLTAAR 199

Query: 386 LTASNSVL*LPGSTRGVSAGNLRTATASRRHPTLIAPCVKYTTSSPAASCNKRP 225
            T S +    P +T   S+G+ R+AT +R +P   +   K   S PA    +RP
Sbjct: 200 ATTSTAA---PRTTT-TSSGSARSATPTRSNPRPSSASSKKPVSRPATP-TRRP 248


>At2g26780.1 68415.m03212 expressed protein contains Pfam profile
           TBP (TATA-binding protein) -interacting protein 120
           (TIP120); contains TIGRFAM profile TIGR01612:
           reticulocyte binding protein
          Length = 1866

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 22/70 (31%), Positives = 32/70 (45%)
 Frame = +2

Query: 176 SKCYKKVLRLLPDTVVMDVYYKMLQEKKLCILHTELSELDVFERLLRFAGCQLKLLECFQ 355
           SK    V   LP+ V +    K++  + L + HT+LS  +   RLL  A C L   E   
Sbjct: 680 SKALVSVGSYLPEMVELYFSRKIVWLRSL-LSHTDLSTRESVSRLLGMASCALSDAESCS 738

Query: 356 AVIEHCSKLS 385
            + E  S +S
Sbjct: 739 LLSELISSIS 748


>At2g20770.1 68415.m02441 lanthionine synthetase C-like family
           protein contains Pfam domain, PF05147: Lanthionine
           synthetase C-like protein
          Length = 405

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +2

Query: 656 LALKLLGITEDVAELPECSFSVAETCDVXSXTDGDITNPCXREG 787
           L  +   +T +  +L  C   + + CD  S + GD+T  C R G
Sbjct: 79  LLFRAYQVTGNANDLSLC-LEIVKACDTASASSGDVTFLCGRAG 121


>At1g52970.1 68414.m05992 hypothetical protein
          Length = 149

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = +2

Query: 632 PAAAETYSLALKLLGITEDVAELPECSFSVAETCDVXSXTDGDITNPCXREGXISEDCC 808
           PAAA  Y   L     T  +  L +CS  ++  C+V      ++T     +  +SEDCC
Sbjct: 39  PAAAYEYDHELLSHMTTRRIKFLQDCSDKMSSKCNV------EMTEGLIDDKPVSEDCC 91


>At5g37830.1 68418.m04555 hydantoinase/oxoprolinase family protein
           contains Pfam profiles: PF02538 hydantoinase
           B/oxoprolinase, PF01968 hydantoinase/oxoprolinase,
           PF05378 hydantoinase/oxoprolinase N-terminal region
          Length = 1266

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = +1

Query: 130 FIRTVPDEFSEFLVQIKVLQKGLAFTSRYSGHGRLLQDAAGEEVVY 267
           FI    D+  +  V       GLA  SR+SGH  +L   AG  V Y
Sbjct: 256 FISKFDDDLGKVNVLFMQSDGGLAPESRFSGHKAVLSGPAGGVVGY 301


>At1g67120.1 68414.m07636 midasin-related similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q12019)
            [Saccharomyces cerevisiae]; similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
            sapiens]; contains Prosite PS00017: ATP/GTP-binding site
            motif A (P-loop)
          Length = 5336

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +2

Query: 104  LPAKKIPENLYELCLTNLVNF 166
            L AK +PE+L  LCL N  NF
Sbjct: 3612 LDAKLVPEHLLRLCLENKKNF 3632


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,917,463
Number of Sequences: 28952
Number of extensions: 339014
Number of successful extensions: 1204
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1204
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2071520424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)