Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_H16
         (921 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40957| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.75 
SB_42974| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_53419| Best HMM Match : TPR_2 (HMM E-Value=4.2e-06)                 29   4.0  
SB_45663| Best HMM Match : TPR_2 (HMM E-Value=0.032)                   28   9.2  

>SB_40957| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 301

 Score = 31.9 bits (69), Expect = 0.75
 Identities = 18/40 (45%), Positives = 23/40 (57%)
 Frame = -2

Query: 344 LLRTKHHAYSNWALWETFPWCNCS*KTLSNFCKSSDETIS 225
           LLR +  AY     W T   CNCS +TLS++  SS  T+S
Sbjct: 252 LLRERSPAYLR--TWCTVSSCNCSTRTLSSWGNSSTRTLS 289


>SB_42974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 477

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = +2

Query: 233 FHRKICKNSKGSFMNNCTKGTFPTKPSLNTHGV*CAASIQRIYERESYFLKNCS 394
           FHR  CK  +G        G   T PS   HG  C +S+ + +  +S F  +CS
Sbjct: 351 FHRSECKPRRGHIQVKHKLGCVFTLPSQGCHGE-CLSSV-KPFAHKSGFATSCS 402


>SB_53419| Best HMM Match : TPR_2 (HMM E-Value=4.2e-06)
          Length = 378

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 15/60 (25%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
 Frame = +1

Query: 379 LKELFNSHPEGKRDYLFYLAIGN--ARIKEYXKALHYVKSFLEIEPXNQQVLALERXINK 552
           +K+L  + P        +LA+G+  +++++Y KAL Y+++  +++P N+ +  L+  + K
Sbjct: 13  IKQLKKNIPANPSCAGIHLALGSYYSKMRDYSKALKYLENAEKLDPGNKDIAWLKVKVLK 72


>SB_45663| Best HMM Match : TPR_2 (HMM E-Value=0.032)
          Length = 131

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 12/47 (25%), Positives = 27/47 (57%)
 Frame = +1

Query: 361 RKGILLLKELFNSHPEGKRDYLFYLAIGNARIKEYXKALHYVKSFLE 501
           +K   +LK++   +   K + ++YL + + + K+Y +A+ Y+K   E
Sbjct: 69  KKAATILKKIEGGNSVFKEEAIWYLGLLSLKQKKYNEAIDYLKLITE 115


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,576,942
Number of Sequences: 59808
Number of extensions: 287688
Number of successful extensions: 690
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2669453024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)