Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_H16
         (921 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g12390.1 68418.m01457 expressed protein                             50   2e-06
At3g57090.1 68416.m06356 expressed protein                             43   3e-04
At5g26320.1 68418.m03146 meprin and TRAF homology domain-contain...    29   5.7  
At1g66070.1 68414.m07499 translation initiation factor-related s...    29   5.7  

>At5g12390.1 68418.m01457 expressed protein
          Length = 167

 Score = 50.4 bits (115), Expect = 2e-06
 Identities = 26/77 (33%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
 Frame = +1

Query: 322 AWCLVRSKYPTDIRKGILLLKELFNSHPEGK--RDYLFYLAIGNARIKEYXKALHYVKSF 495
           +W LV SK P+DI++GI +L+ L  +       R+ L+ LA+G  R  ++ ++   ++  
Sbjct: 59  SWALVHSKMPSDIQRGIAMLEALVVNDTSAMKLREKLYLLALGYYRSGDFSRSRDCIERC 118

Query: 496 LEIEPXNQQVLALERXI 546
           LE+EP + Q  AL++ I
Sbjct: 119 LEVEPESGQAQALKKAI 135


>At3g57090.1 68416.m06356 expressed protein
          Length = 170

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 4/100 (4%)
 Frame = +1

Query: 259 ERVFHEQLHQGNVSHKAQ--FEYAWCLVRSKYPTDIRKGILLLKELFNSH--PEGKRDYL 426
           ER   E    G    K +     +W LV S+   D+++GI +L+    S   P   R+ L
Sbjct: 34  EREVREATDSGTEDLKKECLMRLSWALVHSRQTEDVQRGIAMLEASLESSAPPLEDREKL 93

Query: 427 FYLAIGNARIKEYXKALHYVKSFLEIEPXNQQVLALERXI 546
           + LA+G  R   Y ++   V   +E++   +Q L L++ I
Sbjct: 94  YLLAVGYYRSGNYSRSRQLVDRCIEMQADWRQALVLKKTI 133


>At5g26320.1 68418.m03146 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein similar to
           ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 352

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +1

Query: 283 HQGNVSHKAQFEYAWCLVRSKYPTDIRKGILLLKELFNS 399
           +Q + +H   +  AWC +RS Y  +    I+LL++L NS
Sbjct: 288 NQRSSNHIQLYSEAWCAIRSGYGIE-GNSIILLEDLQNS 325


>At1g66070.1 68414.m07499 translation initiation factor-related
           similar to Eukaryotic translation initiation factor 3
           subunit 1 (eIF-3 alpha) (eIF3 p35) (eIF3j)
           (Swiss-Prot:O75822) [Homo sapiens]
          Length = 226

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 403 PEGKRDYLFYLAIGNARIKEYXKALHYV 486
           P+ + D+L Y  + + RIK Y K+ HY+
Sbjct: 123 PKSESDFLEYAEMISHRIKPYEKSYHYI 150


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,348,050
Number of Sequences: 28952
Number of extensions: 205780
Number of successful extensions: 356
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 355
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2188225800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)