Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_H15
(913 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7616| Best HMM Match : NAD_binding_2 (HMM E-Value=2.00386e-43) 92 5e-19
SB_43094| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 2e-07
SB_46306| Best HMM Match : 6PGD (HMM E-Value=0) 32 0.74
SB_9457| Best HMM Match : PHD (HMM E-Value=3.3e-08) 32 0.74
SB_31364| Best HMM Match : 2-Hacid_dh_C (HMM E-Value=1.5e-39) 31 1.7
SB_7271| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_57023| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.9
SB_45666| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.9
SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11) 29 6.9
>SB_7616| Best HMM Match : NAD_binding_2 (HMM E-Value=2.00386e-43)
Length = 270
Score = 92.3 bits (219), Expect = 5e-19
Identities = 60/170 (35%), Positives = 91/170 (53%)
Frame = +1
Query: 211 MGGFMAANLVKKGFTVRGYDPSKDALNAAAKNGVTPANSIXXXXXXXXXXXSILTSNKVV 390
MG MA NL+ +G+ V +D ++++ + G A + + +NK+V
Sbjct: 1 MGSPMAKNLLDQGYGVVVHDIFPESVDDLRQLGAGVAET---------PDEVAMKTNKIV 51
Query: 391 LDVYLGKDGVVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKGLGFTDAPVSGGVMGAQNA 570
L V + G+LLID STIDP + K+I +A EKG + DAPVSGG+ A+
Sbjct: 52 --TMLPSSSV----QDGTLLIDCSTIDPALSKEISEMASEKGATYLDAPVSGGITAAKAG 105
Query: 571 TLAFMAGGRKEDFERSLPLLQVMGAKQFXCGQIGSGQVAXLTNXMLMGIT 720
TL FM GG++E FE++ +L MG G G+GQ A + N ML+ ++
Sbjct: 106 TLTFMVGGKEEGFEQAKDVLMSMGKNVIHTGPNGTGQAAKICNNMLLAVS 155
>SB_43094| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 53.6 bits (123), Expect = 2e-07
Identities = 35/128 (27%), Positives = 61/128 (47%)
Frame = +1
Query: 166 SSNTDKNVAFLGLGNMGGFMAANLVKKGFTVRGYDPSKDALNAAAKNGVTPANSIXXXXX 345
+S + + V +G GN+G +A L K +V+ +D ++ N G T NS
Sbjct: 3 TSASPRTVGLVGTGNVGSAVAVGLRKIDVSVKAFDLQQNNYNFLESTGTTLVNSPEEVTK 62
Query: 346 XXXXXXSILTSNKVVLDVYLGKDGVVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKGLGF 525
+ L + V L G+++ K+GS+ ID +T D N ++ +A KG+
Sbjct: 63 DVDVLITALPKPQHVKSA-LEDTGMLSMLKEGSVWIDHTTTDYNETIRLGELATSKGVHA 121
Query: 526 TDAPVSGG 549
+AP++GG
Sbjct: 122 VEAPLTGG 129
>SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)
Length = 870
Score = 31.9 bits (69), Expect = 0.74
Identities = 20/72 (27%), Positives = 34/72 (47%)
Frame = +1
Query: 433 KKGSLLIDSSTIDPNVPKQIFPIALEKGLGFTDAPVSGGVMGAQNATLAFMAGGRKEDFE 612
+ G ++ID + + E+GL F + VSGG GA+ + M GG ++ +
Sbjct: 139 ESGDIIIDGGNSEYKDSMRRCKALEERGLLFVGSGVSGGEEGARYGP-SLMPGGSEKAWP 197
Query: 613 RSLPLLQVMGAK 648
P+ Q + AK
Sbjct: 198 HIKPIFQAIAAK 209
>SB_9457| Best HMM Match : PHD (HMM E-Value=3.3e-08)
Length = 344
Score = 31.9 bits (69), Expect = 0.74
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = +1
Query: 454 DSSTIDPNVPKQIFPI-ALEKGLGFTDAPVSGGVMGAQNATLAFMAGGRKEDFERSLPLL 630
++ + P Q F I L + P+SGGV G +AT + + G+K + ++ L
Sbjct: 263 ETKSFAPPTTAQSFAIPGLSNAASTSKQPISGGVGGTSSATSSGASTGQKSSMQSAMKRL 322
Query: 631 QVMGAK 648
Q++ K
Sbjct: 323 QMVKKK 328
>SB_31364| Best HMM Match : 2-Hacid_dh_C (HMM E-Value=1.5e-39)
Length = 401
Score = 30.7 bits (66), Expect = 1.7
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 181 KNVAFLGLGNMGGFMAANLVKKGFTVRGYDPSKDALNAAAKN 306
K +A +GLG +G +A + G GYDP +AA N
Sbjct: 9 KTLAIIGLGRIGREVALRMQSYGVKTIGYDPLVSPQDAAESN 50
>SB_7271| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 70
Score = 30.3 bits (65), Expect = 2.3
Identities = 8/33 (24%), Positives = 15/33 (45%)
Frame = +2
Query: 188 WLSSASETWEDSWLRTWLKRVSQFAATILPKMH 286
W+ + W D W+ W+ + A + P +H
Sbjct: 28 WMDGWMDGWMDGWMDGWMDVIDVLCAVLFPDLH 60
>SB_57023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 388
Score = 28.7 bits (61), Expect = 6.9
Identities = 13/49 (26%), Positives = 21/49 (42%)
Frame = -2
Query: 501 YREDLFGNIRIYRTRIDQKRSFFRMSHNAIFAQVHVEHDFIAGQYGNDH 355
Y ++ N Y D S + H+ ++ EHD +YG+DH
Sbjct: 250 YEQEHDTNTSRYEQEHDTNTSRYEQEHDTNTSRYEQEHDTNTSRYGHDH 298
>SB_45666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 70
Score = 28.7 bits (61), Expect = 6.9
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 104 KWPRAQY*ALSVCTQPPDGRIVLTPTRMWLSSASETW 214
KW Q S+C + P+ +I + R +LS++S+ W
Sbjct: 3 KWSGNQVLGQSLCLRGPEQKIASSCVRAFLSTSSDDW 39
>SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)
Length = 1903
Score = 28.7 bits (61), Expect = 6.9
Identities = 13/49 (26%), Positives = 21/49 (42%)
Frame = -2
Query: 501 YREDLFGNIRIYRTRIDQKRSFFRMSHNAIFAQVHVEHDFIAGQYGNDH 355
Y ++ N Y D S + H+ ++ EHD +YG+DH
Sbjct: 306 YEQEHDTNTSRYEQEHDTNTSRYEQEHDTNTSRYEQEHDTNTSRYGHDH 354
Score = 28.7 bits (61), Expect = 6.9
Identities = 13/49 (26%), Positives = 21/49 (42%)
Frame = -2
Query: 501 YREDLFGNIRIYRTRIDQKRSFFRMSHNAIFAQVHVEHDFIAGQYGNDH 355
Y ++ N Y D S + H+ ++ EHD +YG+DH
Sbjct: 698 YEQEHDTNTSRYEQEHDTNTSRYEQEHDTNTSRYEQEHDTNTSRYGHDH 746
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,211,537
Number of Sequences: 59808
Number of extensions: 620765
Number of successful extensions: 1685
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1679
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2633701421
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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