Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_H13
         (1164 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex...    25   6.4  

>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 760

 Score = 25.4 bits (53), Expect(2) = 6.4
 Identities = 11/35 (31%), Positives = 12/35 (34%)
 Frame = +2

Query: 803 PPPXPXPTXXLXTXXPAXXGRAXPXXSLRHPASHP 907
           PPP P PT    T  P     + P      P   P
Sbjct: 523 PPPSPAPTPVYCTRPPPPPPHSPPPPQFSPPPPEP 557



 Score = 21.8 bits (44), Expect(2) = 6.4
 Identities = 8/22 (36%), Positives = 9/22 (40%)
 Frame = +2

Query: 758 PHPXXXXXHRAPXXXPPPXPXP 823
           P P     +  P   PPP P P
Sbjct: 487 PPPPPPPVYSPPPPPPPPPPPP 508


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,426,869
Number of Sequences: 28952
Number of extensions: 124876
Number of successful extensions: 192
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 12,070,560
effective HSP length: 82
effective length of database: 9,696,496
effective search space used: 2957431280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)