Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_H12
(922 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0) 40 0.003
SB_39831| Best HMM Match : Kazal_1 (HMM E-Value=2.4e-19) 34 0.14
SB_34870| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.19
SB_17350| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.19
SB_13882| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.2e-13) 34 0.19
SB_39834| Best HMM Match : Kazal_1 (HMM E-Value=0) 33 0.32
SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.43
SB_8425| Best HMM Match : EGF (HMM E-Value=0) 32 0.75
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.99
SB_5983| Best HMM Match : MIF4G (HMM E-Value=1.6) 31 1.3
SB_10970| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.0
SB_44384| Best HMM Match : Kazal_1 (HMM E-Value=1.4e-21) 29 4.0
SB_15403| Best HMM Match : CH (HMM E-Value=0) 29 4.0
SB_33512| Best HMM Match : Kazal_1 (HMM E-Value=2.6e-20) 29 5.3
SB_35516| Best HMM Match : Kazal_1 (HMM E-Value=0) 29 7.0
>SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 2411
Score = 39.9 bits (89), Expect = 0.003
Identities = 28/86 (32%), Positives = 36/86 (41%), Gaps = 11/86 (12%)
Frame = +2
Query: 170 VCGTDYCE-KNPCIQPPLVCPKNTEHRARHAGKCACC---------PACVTLLGEGATCK 319
VCG+D +N C L CPKN +H G CA C CVT L + A C
Sbjct: 1157 VCGSDKVSYRNKCYMIALNCPKNKYVYVKHEGYCAPCRLAECHKVYAKCVTTLYQTARCV 1216
Query: 320 IYS-KELGETPSAVCKEPLKCIKRVC 394
+ +E AVC +K + C
Sbjct: 1217 CPTLQECAARKGAVCASDMKTYQSEC 1242
Score = 34.7 bits (76), Expect = 0.11
Identities = 24/70 (34%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Frame = +2
Query: 164 ALVCGTD-YCEKNPCIQPPLVCPKNTEHRARHAGKCACCPACVTLLGEGATCKIYSKELG 340
A VCGTD + CI C R +HAG+C C V G C + G
Sbjct: 372 APVCGTDDRTYPSECIMKTSACADKKAVRVKHAGECGPCGTLVCT--NGKNC--VTSHQG 427
Query: 341 ETPSAVCKEP 370
T AVC P
Sbjct: 428 LTRQAVCACP 437
Score = 28.7 bits (61), Expect = 7.0
Identities = 13/37 (35%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Frame = +2
Query: 170 VCGTDYCEK-NPCIQPPLVCPKNTEHRARHAGKCACC 277
VCGTD N C+ C K H G C C
Sbjct: 229 VCGTDKSSYLNECVMKARACRKEKSVTVAHRGFCGAC 265
>SB_39831| Best HMM Match : Kazal_1 (HMM E-Value=2.4e-19)
Length = 173
Score = 34.3 bits (75), Expect = 0.14
Identities = 22/77 (28%), Positives = 30/77 (38%), Gaps = 2/77 (2%)
Frame = +2
Query: 170 VCGTDYCE-KNPCIQPPLVCPKNTEHRARHAGKCACCPACVTLLGEGA-TCKIYSKELGE 343
VCG+D NPC+ C N +H GKC +C +G CK+ +G
Sbjct: 37 VCGSDNVTYSNPCMLRSATCKSNGTITMKHRGKCGSSQSCEQKKCKGTKVCKM----IGN 92
Query: 344 TPSAVCKEPLKCIKRVC 394
P + C K C
Sbjct: 93 KPRCMRPPQTACSKVRC 109
>SB_34870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 248
Score = 33.9 bits (74), Expect = 0.19
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +3
Query: 147 RQQRTVLWYVVQTTVKKIHAYSHHLFALRTLSIAPD 254
R +R VLW V + ++ + A+S+ LF+L + + PD
Sbjct: 171 RSERRVLWDVASSKIRAVTAFSNSLFSLNSNAFCPD 206
>SB_17350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2956
Score = 33.9 bits (74), Expect = 0.19
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 8/63 (12%)
Frame = +2
Query: 221 VCPKNTEHRARHAGKCACCPACVTLLG-EGAT-------CKIYSKELGETPSAVCKEPLK 376
+CP NT KC CPA ++ G +GAT CK Y E ++ +K
Sbjct: 2764 LCPPNTYQDQEQQSKCHMCPAGLSTFGLQGATSKDQCRECKDYEPEDKYGDCTTWRQQMK 2823
Query: 377 CIK 385
C+K
Sbjct: 2824 CVK 2826
>SB_13882| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.2e-13)
Length = 340
Score = 33.9 bits (74), Expect = 0.19
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 8/63 (12%)
Frame = +2
Query: 221 VCPKNTEHRARHAGKCACCPACVTLLG-EGAT-------CKIYSKELGETPSAVCKEPLK 376
+CP NT KC CPA ++ G +GAT CK Y E ++ +K
Sbjct: 65 LCPPNTYQDQEQQSKCHMCPAGLSTFGLQGATSKDQCRECKDYEPEDKYGDCTTWRQQMK 124
Query: 377 CIK 385
C+K
Sbjct: 125 CVK 127
>SB_39834| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 293
Score = 33.1 bits (72), Expect = 0.32
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Frame = +2
Query: 170 VCGTD-YCEKNPCIQPPLVCPKNTEHRARHAGKCA-----CCPAC 286
VCG+D NPC+ VC N + R +H G C C P C
Sbjct: 129 VCGSDGKTYDNPCVFKIAVCQMNGQLRLKHRGACGSRPDKCAPIC 173
Score = 33.1 bits (72), Expect = 0.32
Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 4/74 (5%)
Frame = +2
Query: 170 VCGTDYCE-KNPCIQPPLVCPKNTEHRARHAGKCACCPACVTLLGEGA-TCKIYSKE--L 337
VCG+D NPC+ C N +H GKC +C +G CK+ +
Sbjct: 180 VCGSDNVTYSNPCMLRSATCKSNGTITMKHRGKCGSSQSCEQKKCKGTKVCKMIGNKPRC 239
Query: 338 GETPSAVCKEPLKC 379
P C E ++C
Sbjct: 240 MRPPQTDCSE-VRC 252
>SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3261
Score = 32.7 bits (71), Expect = 0.43
Identities = 24/76 (31%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Frame = +2
Query: 170 VCGTDY-CEKNPCIQPPLVCPKNTEHRARHAGKCACCPACVTLLGEGATCKIYSKELGET 346
VCG+D N C+ C NT R G C C +TCK +
Sbjct: 1217 VCGSDNNTYDNECLMRQQACVANTTVAVRRKGDCDPCSNVTCDSPPYSTCKAQD----DQ 1272
Query: 347 PSAVCKEPL-KCIKRV 391
P+ VC EP K +K V
Sbjct: 1273 PTCVCVEPCPKTLKPV 1288
Score = 28.7 bits (61), Expect = 7.0
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Frame = +2
Query: 167 LVCGTDYCE-KNPCIQPPLVCPKNTEHRARHAGKCACC 277
LVCGTD N C+ C N+ + + G C C
Sbjct: 1519 LVCGTDNITYSNECLMKYQACRTNSALKVKRKGDCDVC 1556
>SB_8425| Best HMM Match : EGF (HMM E-Value=0)
Length = 1955
Score = 31.9 bits (69), Expect = 0.75
Identities = 16/58 (27%), Positives = 25/58 (43%)
Frame = +2
Query: 206 IQPPLVCPKNTEHRARHAGKCACCPACVTLLGEGATCKIYSKELGETPSAVCKEPLKC 379
++P L CPK T A C+ CP + G GA ++ S+ C+ +C
Sbjct: 390 VEPCLPCPKGTYQTAIGQMSCSECPGTKSTHGPGADSHDMCLDIDNCASSPCQNGGRC 447
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 31.5 bits (68), Expect = 0.99
Identities = 20/66 (30%), Positives = 26/66 (39%)
Frame = +2
Query: 173 CGTDYCEKNPCIQPPLVCPKNTEHRARHAGKCACCPACVTLLGEGATCKIYSKELGETPS 352
C + C KN PP+VCPK+ E CC C SK + + P
Sbjct: 1785 CPSTCCIKN---SPPVVCPKSCETTCTPDCPVMCCKNSSPATECPTICA--SKCISKCPE 1839
Query: 353 AVCKEP 370
CK+P
Sbjct: 1840 KCCKQP 1845
>SB_5983| Best HMM Match : MIF4G (HMM E-Value=1.6)
Length = 410
Score = 31.1 bits (67), Expect = 1.3
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = +3
Query: 132 WWHALRQQRTVLWYVVQTTVKKIHAYSHH 218
W HA R +VLW+++++ +KK++ + H
Sbjct: 135 WSHARRNFGSVLWWLLESRIKKVNKANRH 163
>SB_10970| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1256
Score = 29.9 bits (64), Expect = 3.0
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Frame = +2
Query: 137 ACVASAAYGALVCGTDYCEKNPCIQPPLVCPKNT-EHRARHAGKCACC---PACVTLLGE 304
+CV +A +G C C P+ C T + R+ CA PAC T LGE
Sbjct: 314 SCVCAAGWGGSTCSLPEC--------PITCTSGTCDLTVRYCSGCAAGFTGPACNTSLGE 365
Query: 305 G 307
G
Sbjct: 366 G 366
>SB_44384| Best HMM Match : Kazal_1 (HMM E-Value=1.4e-21)
Length = 85
Score = 29.5 bits (63), Expect = 4.0
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = +2
Query: 170 VCGTDYCE-KNPCIQPPLVCPKNTEHRARHAGKC 268
VCG+D NPC+ C N +H GKC
Sbjct: 51 VCGSDNVTYSNPCMLRSATCKSNGTITMKHRGKC 84
>SB_15403| Best HMM Match : CH (HMM E-Value=0)
Length = 1907
Score = 29.5 bits (63), Expect = 4.0
Identities = 26/81 (32%), Positives = 32/81 (39%), Gaps = 6/81 (7%)
Frame = +2
Query: 170 VCGTD-YCEKNPCIQPPLVCPKNTEHRARHAGKCACCPACVTLLGEGATCKIYSKELGET 346
+CGTD N C + T H G C P+C L CK YS +
Sbjct: 1246 ICGTDGKTYNNDKDLESAACAQQTSIVRWHKGPCTVEPSCANL-----QCKYYSYCIVRD 1300
Query: 347 PSAV--CKEPLKC--IK-RVC 394
AV C +P C +K RVC
Sbjct: 1301 GGAVCTCPDPAACPLVKSRVC 1321
>SB_33512| Best HMM Match : Kazal_1 (HMM E-Value=2.6e-20)
Length = 87
Score = 29.1 bits (62), Expect = 5.3
Identities = 14/38 (36%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Frame = +2
Query: 170 VCGTDY-CEKNPCIQPPLVCPKNTEHRARHAGKCACCP 280
VCG+D N C+ C NT R G C CP
Sbjct: 10 VCGSDNNTYDNECLMRQQACVANTTVAVRRKGDCEPCP 47
>SB_35516| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 320
Score = 28.7 bits (61), Expect = 7.0
Identities = 14/38 (36%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Frame = +2
Query: 170 VCGTDY-CEKNPCIQPPLVCPKNTEHRARHAGKCACCP 280
VCGTD N C+ C N R G C CP
Sbjct: 172 VCGTDNNTYDNECLMRQQACVANATVAVRRKGHCEPCP 209
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,486,317
Number of Sequences: 59808
Number of extensions: 389974
Number of successful extensions: 971
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2669453024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -