Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_H12
         (922 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g11620.1 68418.m01359 SWIM zinc finger family protein / mitog...    29   4.3  
At1g78860.1 68414.m09192 curculin-like (mannose-binding) lectin ...    29   4.3  
At1g54890.1 68414.m06267 late embryogenesis abundant protein-rel...    28   7.6  
At1g43910.1 68414.m05066 AAA-type ATPase family protein contains...    28   7.6  

>At5g11620.1 68418.m01359 SWIM zinc finger family protein /
           mitogen-activated protein kinase kinase kinase
           (MAPKKK)-related contains weak similarity to
           Swiss-Prot:P53349 mitogen-activated protein kinase
           kinase kinase 1 (MAPK/ERK kinase kinase 1, MEK kinase 1,
           MEKK 1) [Mus musculus]; contains Pfam profile PF04434:
           SWIM zinc finger
          Length = 273

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 305 GATCKIYSKELGETPSAVCKEPLKCIKRVCTKLV 406
           GATC +Y+  L  TP+  C +  K  K +   L+
Sbjct: 53  GATCNVYTVTLMATPTCTCPDRKKPCKHILFVLI 86


>At1g78860.1 68414.m09192 curculin-like (mannose-binding) lectin
           family protein low similarity to Ser/Thr protein kinase
           [Zea mays] GI:2598067; contains Pfam profile PF01453:
           Lectin (probable mannose binding)
          Length = 443

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 260 GKCACCPACVTLLGEGATCKIYS 328
           G+C  CP+ + LLG   TCKI S
Sbjct: 330 GQCNACPSDIGLLGWDETCKIPS 352


>At1g54890.1 68414.m06267 late embryogenesis abundant
           protein-related / LEA protein-related similar to late
           embryogenesis abundant protein (EMB7) GI:1350543 from
           [Picea glauca]
          Length = 347

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 2/86 (2%)
 Frame = +2

Query: 119 IFIMLVACVASAAY-GALVCGTDYCEKNPCIQPPLVCPKNTEHRARHAGKC-ACCPACVT 292
           + +ML AC+       AL   T +  K+PC      CPK     +   G   AC   C  
Sbjct: 13  LVVMLYACIVVVQLEAALETKTCFQRKSPCFLKKQTCPKQCPSFSPPNGSTKACVIDCFN 72

Query: 293 LLGEGATCKIYSKELGETPSAVCKEP 370
            + + ATC+          SA C +P
Sbjct: 73  PICK-ATCRNRKPNCNGKGSA-CLDP 96


>At1g43910.1 68414.m05066 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 475

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +2

Query: 125 IMLVACVASAAYGALVCGTDYCEKNPCIQPPLVCPKNTE 241
           + L  C+A  + G L+ G+    KNP  +P L  P NT+
Sbjct: 81  VYLPTCLAGLSTGKLLVGSSNL-KNPAAEPKLGIPVNTK 118


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,739,171
Number of Sequences: 28952
Number of extensions: 257033
Number of successful extensions: 610
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2188225800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)