Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_H11
         (886 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te...    30   0.38 
SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    29   0.88 
SPBC32H8.01c ||SPBP22H7.10c|conserved fungal protein|Schizosacch...    27   4.7  
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca...    26   6.2  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    26   8.2  

>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
           termination factor Reb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 504

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 18/96 (18%), Positives = 42/96 (43%), Gaps = 2/96 (2%)
 Frame = +1

Query: 280 SIIQNVVDDLIIDKRRNTMEYCYKLWVGNGQHIVRKYFP--FNFXTHHGRKLRQAHFQKL 453
           +II   V + I+D+  +  ++C ++W G     +R ++   +   +H   K    H ++ 
Sbjct: 247 AIISQEVHNFIMDQGWSEYQFCNQIWAGKCPKTIRMFYSNLYKKLSHRDAKSIYHHVRRA 306

Query: 454 QPRSEARFHNQSLETKDLHSAMVQTSRLNSSVGSSL 561
               E R      E ++L   +V+  +  + +G  +
Sbjct: 307 YNPFEDRCVWSKEEDEELRKNVVEHGKCWTKIGRKM 342


>SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 578

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -2

Query: 366 VADPELVAVLHGVPSLVNDQVVDYILDDGTPCSASR 259
           V D   V + H +PS+V D   DYI  +G    ASR
Sbjct: 239 VYDSPWVDLTHSLPSVVADDAADYIPSEGFHHRASR 274


>SPBC32H8.01c ||SPBP22H7.10c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +1

Query: 448 KLQPRSEARFHNQSLETKDLHSAMVQTSRLNSSVGSSLPCGRTTE 582
           K +P  E +   Q+ + KD+ SA  +   +NSS  SS  C   T+
Sbjct: 100 KQEPNLEVQ---QTEKEKDVDSASAENESINSSSSSSKECSTQTQ 141


>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
           catalytic subunit Arm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 811

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 546 SWKFITLWENNRVYFKVHNTKYNQYL-KMSSKTDCNNRDRLVYGGNTAD 689
           +WK I+L E  R+++        QYL K SS  D  NRD  V+    +D
Sbjct: 538 TWKSISLVERARIHYLTAFKPPKQYLPKCSSPKD--NRDLKVFADYGSD 584


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = -2

Query: 393 EVLSNNVLSVADPELVAVLHGVPSLVNDQVVDYILD 286
           E LS    S   P+L    HGV + VN  V DYI D
Sbjct: 198 ETLSQPAFSFNVPDL----HGVDNKVNQYVFDYIKD 229


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,873,356
Number of Sequences: 5004
Number of extensions: 52366
Number of successful extensions: 189
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)