Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_H11
         (886 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0142 - 2103224-2103864,2104264-2104399                           30   2.1  
01_06_0795 - 32051794-32053362,32053452-32053595,32054102-320549...    30   2.8  
12_02_1127 - 26334225-26334500,26334600-26334761,26334849-263349...    28   8.7  
02_05_0844 - 32144417-32144764,32145588-32145686,32146218-321464...    28   8.7  
01_01_0574 + 4263247-4263615,4263945-4263992,4264308-4264514,426...    28   8.7  

>09_01_0142 - 2103224-2103864,2104264-2104399
          Length = 258

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
 Frame = +1

Query: 370 QHIVRKYFPFNFXTHHGRK--LRQAHFQKLQPRSEARFHNQSLETKDLHSAMVQTSRLNS 543
           +H++ KY P     +HGR    R  H   L P S A+ HNQ    +D  S + +  R   
Sbjct: 40  RHLI-KYAPVQ--ANHGRSNIARDVHKSLLVPVSAAKVHNQKPAPRDQASQLCRNCRKPG 96

Query: 544 SVGSSLPCGRTTE 582
              S  P  R  +
Sbjct: 97  HCFSDCPLPRAAK 109


>01_06_0795 -
           32051794-32053362,32053452-32053595,32054102-32054965,
           32055335-32055892
          Length = 1044

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 648 NNRDRLVYGGNTADSTSEQWFLQPAKYENDVLFFIYNRE 764
           +N  R  +G +T+   SE   LQP K EN +LF +  R+
Sbjct: 746 SNVPRSPFGCSTSIMVSEGDLLQPEKIENGILFNVVKRD 784


>12_02_1127 -
           26334225-26334500,26334600-26334761,26334849-26334938,
           26335075-26335236,26335330-26335431,26335562-26335633,
           26335716-26335851,26335939-26336120,26336387-26336406,
           26336440-26336521,26336612-26336713,26336796-26336909,
           26337412-26337462,26337583-26337651,26337972-26338049,
           26338357-26338458,26338785-26338865,26339008-26339109,
           26339217-26339576
          Length = 780

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +2

Query: 416 MAGNFVKLISRNYNLALKLGSTTN-PSKRKTCIRRWCRQAD*TRQLEVHYLVGEQQSVLQ 592
           MA        R+++  + +GS+ + P     C+RRWC  A  +  L V  + G   S  +
Sbjct: 1   MAAAAAAAAPRHHHHHVVVGSSRSAPVSVSVCVRRWCGGASSSALLRVGMIGGASASSAE 60

Query: 593 G 595
           G
Sbjct: 61  G 61


>02_05_0844 -
           32144417-32144764,32145588-32145686,32146218-32146410,
           32147049-32147107,32147189-32147263,32147557-32147670,
           32147776-32147895,32148204-32148216,32148421-32148512,
           32149078-32149164,32149254-32149328,32149630-32149680,
           32149852-32149947,32150135-32150221,32150312-32150368,
           32150475-32150600,32150709-32150949,32151028-32151114,
           32151260-32151637,32152847-32153187
          Length = 912

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = +1

Query: 394 PFNFXTHHGRKLRQAHFQKL--QPRSEARFHNQSLETKDLHSAMVQTSRLNSSVGSSLPC 567
           P N    + R++ +   QK+  Q +++ +    SL T+DL        ++ S +  +L C
Sbjct: 650 PANDKQVYQRQMSKEGLQKVIQQEQADGKMQGSSLSTEDLRDLFTFHEQIRSEIHENLKC 709

Query: 568 GR 573
            R
Sbjct: 710 NR 711


>01_01_0574 +
           4263247-4263615,4263945-4263992,4264308-4264514,
           4264670-4264826,4264958-4265041,4265785-4265909,
           4268100-4268218,4268535-4268619,4269087-4269134
          Length = 413

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 550 QLTSSVCLSAPSPNASLSFRGIGCGTELQS 461
           ++T ++CL      A + FRGI CG  + S
Sbjct: 296 EVTLNICLGKHFTGADMYFRGIRCGNHVNS 325


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,600,574
Number of Sequences: 37544
Number of extensions: 369854
Number of successful extensions: 1088
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1087
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)