Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_H11
         (886 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36386| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_55864| Best HMM Match : Sad1_UNC (HMM E-Value=6.9e-25)              29   6.6  

>SB_36386| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 92

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = +1

Query: 472 RFHNQSLETKDLHSAMVQTSRLNSSVGSSLPCG 570
           R+  +S ET DLH   V TS       SSL CG
Sbjct: 49  RWQTKSAETPDLHEGRVGTSPPTGPPTSSLHCG 81


>SB_55864| Best HMM Match : Sad1_UNC (HMM E-Value=6.9e-25)
          Length = 526

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -1

Query: 394 GSTF*QCAVRCRPRA-CSSTPWCSVSC 317
           G T     +  RP+A CS +PWC ++C
Sbjct: 270 GDTNNNVTIAARPKAWCSCSPWCVLTC 296


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,137,777
Number of Sequences: 59808
Number of extensions: 415545
Number of successful extensions: 1107
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1106
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2526446612
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)