Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_H11
         (886 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006834-8|AAF40006.1|  865|Caenorhabditis elegans Hypothetical ...    29   5.8  
Z27079-6|CAA81594.1|  288|Caenorhabditis elegans Hypothetical pr...    28   7.7  
AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric c...    28   7.7  
AF039047-9|AAB94228.1|  303|Caenorhabditis elegans Hypothetical ...    28   7.7  

>AC006834-8|AAF40006.1|  865|Caenorhabditis elegans Hypothetical
           protein ZK973.2 protein.
          Length = 865

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 12/38 (31%), Positives = 24/38 (63%)
 Frame = -2

Query: 387 LSNNVLSVADPELVAVLHGVPSLVNDQVVDYILDDGTP 274
           L +++L+V D  L  +LHG  +  N ++V++++  G P
Sbjct: 509 LPHHILTVQDLNLNTLLHGAINSENFELVEFLIHMGAP 546


>Z27079-6|CAA81594.1|  288|Caenorhabditis elegans Hypothetical
           protein T05G5.6 protein.
          Length = 288

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/56 (25%), Positives = 27/56 (48%)
 Frame = +1

Query: 307 LIIDKRRNTMEYCYKLWVGNGQHIVRKYFPFNFXTHHGRKLRQAHFQKLQPRSEAR 474
           LI+   +  +   Y+L +  G H  R+ F   F T   ++   A  +K +P+ E++
Sbjct: 233 LIVQMAKEAVNKAYELTLQEGLHFERRLFHATFATKDRKEGMTAFAEKRKPQWESK 288


>AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric
           chromosome bindingprotein protein 1 protein.
          Length = 1475

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 427 LRQAHFQKLQPRSEARFHNQSLETKDLHSAM 519
           LRQ+H Q+L    EAR   + + T+ + SAM
Sbjct: 244 LRQSHSQQLSEIQEARIFEEKMLTQQVDSAM 274


>AF039047-9|AAB94228.1|  303|Caenorhabditis elegans Hypothetical
           protein K11D12.8 protein.
          Length = 303

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -1

Query: 583 TLLFSHKVMNFQLTSSVCLSAPSPNASLSFRGIGCGTEL 467
           T LFSH   NFQ+ S++ + +P  +A+   R +    ++
Sbjct: 171 TQLFSHDKSNFQILSNLTIGSPRRSATWRLRHMSIAVKI 209


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,285,854
Number of Sequences: 27780
Number of extensions: 311164
Number of successful extensions: 967
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)