Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_H11
         (886 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g39510.1 68417.m05587 cytochrome P450 family protein contains...    31   0.77 
At1g64255.1 68414.m07280 SWIM zinc finger family protein contain...    29   4.1  
At1g73760.1 68414.m08540 zinc finger (C3HC4-type RING finger) fa...    29   5.4  
At1g31010.1 68414.m03797 expressed protein contains Pfam PF05329...    29   5.4  
At1g11130.1 68414.m01274 leucine-rich repeat family protein / pr...    28   9.5  

>At4g39510.1 68417.m05587 cytochrome P450 family protein contains
           Pfam PF00067: Cytochrome P450; similar to  Cytochrome
           P450 86A2 (SP:O23066) [Arabidopsis thaliana]
          Length = 508

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +3

Query: 492 RNERLAFG-DGADKQTELVSWKFITLWENNRVYFKVHNTKYNQYLKMSSKTDCNNRDRLV 668
           R+  LAF   G D  +  +SW F  L EN +V  K+     ++ +    +    N D+LV
Sbjct: 302 RDTILAFNLAGRDTTSSALSWFFWLLSENPQVVTKIRKEIIDKNISKDGRNGQENLDKLV 361

Query: 669 Y 671
           Y
Sbjct: 362 Y 362


>At1g64255.1 68414.m07280 SWIM zinc finger family protein contains
           Pfam profile PF04434: SWIM zinc finger
          Length = 750

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 307 LIIDKRRNTMEYCYKLWVGNGQHIVRKYFPFNF 405
           +++D +    EY  KL + +G     KYFP  F
Sbjct: 386 IVVDTKNLNCEYQLKLMIASGVDAANKYFPLAF 418


>At1g73760.1 68414.m08540 zinc finger (C3HC4-type RING finger)
           family protein similar to Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 367

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 514 PNASLSFRGIGCGTELQSEVVV 449
           PN + SFRG+GC T    +V V
Sbjct: 66  PNGTASFRGLGCTTSASQQVSV 87


>At1g31010.1 68414.m03797 expressed protein contains Pfam PF05329:
           Protein of unknown function (DUF731)
          Length = 360

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +3

Query: 615 QYLKMSSKTDCNNRDRLVYGGNTADSTSEQW 707
           Q+L  SS T+ ++R R   GGN A+ +SE+W
Sbjct: 30  QFLSTSS-TESSSRTRGGGGGNRAEKSSEEW 59


>At1g11130.1 68414.m01274 leucine-rich repeat family protein /
           protein kinase family protein contains leucine
           rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to leucine-rich
           repeat transmembrane protein kinase 2 [Zea mays]
           gi|3360291|gb|AAC27895
          Length = 768

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
 Frame = -1

Query: 625 FKYW-LYLVLWTLKYTLLFSHKVMNFQLTSSV-----CLSAPSPNASLSFRGIGCGTELQ 464
           F  W ++  L  L  T+ FS  V N +  S++      L APS +  L+F G  CG + Q
Sbjct: 3   FTRWEVFFGLSVLALTMPFSAGVTNLRDVSAINNLYITLGAPSLHHWLAFGGDPCGEKWQ 62

Query: 463 SEVVVSGN 440
             V  S N
Sbjct: 63  GVVCDSSN 70


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,451,899
Number of Sequences: 28952
Number of extensions: 287378
Number of successful extensions: 847
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2071520424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)