Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_H09
(917 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g02610.1 68418.m00197 60S ribosomal protein L35 (RPL35D) ribo... 73 3e-13
At3g55170.2 68416.m06128 60S ribosomal protein L35 (RPL35C) vari... 73 3e-13
At3g55170.1 68416.m06127 60S ribosomal protein L35 (RPL35C) vari... 73 3e-13
At2g39390.1 68415.m04834 60S ribosomal protein L35 (RPL35B) 73 3e-13
At3g09500.1 68416.m01129 60S ribosomal protein L35 (RPL35A) simi... 73 4e-13
>At5g02610.1 68418.m00197 60S ribosomal protein L35 (RPL35D)
ribosomal protein L35- cytosolic, Arabidopsis thaliana,
PIR:T00549
Length = 123
Score = 72.9 bits (171), Expect = 3e-13
Identities = 44/115 (38%), Positives = 59/115 (51%)
Frame = +1
Query: 94 MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 273
M ++K ELR K LRVAKVTGG +KLSKI+VVRK+IA+V V
Sbjct: 1 MARIKVHELRDKSKTDLQNQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60
Query: 274 YHQKMKVNLRNHYKNKKYKPLXFKSQEDPCYAQGSY*TRSKDQDEERDQKEISLP 438
QK K LR YKNKK PL + ++ + ++ + E +KE+ P
Sbjct: 61 ISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFP 115
Score = 51.6 bits (118), Expect = 7e-07
Identities = 22/39 (56%), Positives = 30/39 (76%)
Frame = +2
Query: 344 RAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYAVK 460
R KKTRA+R+ LTKH+A +KT +E +K+ FP R YA+K
Sbjct: 84 RPKKTRAIRRRLTKHQASLKTEREKKKEMYFPVRKYAIK 122
>At3g55170.2 68416.m06128 60S ribosomal protein L35 (RPL35C) various
ribosomal L35 proteins
Length = 123
Score = 72.9 bits (171), Expect = 3e-13
Identities = 40/87 (45%), Positives = 50/87 (57%)
Frame = +1
Query: 94 MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 273
M ++K ELR K +LRVAKVTGG +KLSKI+VVRK+IA+V V
Sbjct: 1 MARIKVHELRDKSKSDLSTQLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60
Query: 274 YHQKMKVNLRNHYKNKKYKPLXFKSQE 354
QK K LR YKNKK PL + ++
Sbjct: 61 SSQKQKSALREAYKNKKLLPLDLRPKK 87
Score = 50.4 bits (115), Expect = 2e-06
Identities = 22/39 (56%), Positives = 29/39 (74%)
Frame = +2
Query: 344 RAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYAVK 460
R KKTRA+R+ LTKH+A +KT +E +K FP R YA+K
Sbjct: 84 RPKKTRAIRRRLTKHQASLKTEREKKKDMYFPIRKYAIK 122
>At3g55170.1 68416.m06127 60S ribosomal protein L35 (RPL35C) various
ribosomal L35 proteins
Length = 123
Score = 72.9 bits (171), Expect = 3e-13
Identities = 40/87 (45%), Positives = 50/87 (57%)
Frame = +1
Query: 94 MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 273
M ++K ELR K +LRVAKVTGG +KLSKI+VVRK+IA+V V
Sbjct: 1 MARIKVHELRDKSKSDLSTQLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60
Query: 274 YHQKMKVNLRNHYKNKKYKPLXFKSQE 354
QK K LR YKNKK PL + ++
Sbjct: 61 SSQKQKSALREAYKNKKLLPLDLRPKK 87
Score = 50.4 bits (115), Expect = 2e-06
Identities = 22/39 (56%), Positives = 29/39 (74%)
Frame = +2
Query: 344 RAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYAVK 460
R KKTRA+R+ LTKH+A +KT +E +K FP R YA+K
Sbjct: 84 RPKKTRAIRRRLTKHQASLKTEREKKKDMYFPIRKYAIK 122
>At2g39390.1 68415.m04834 60S ribosomal protein L35 (RPL35B)
Length = 123
Score = 72.9 bits (171), Expect = 3e-13
Identities = 44/115 (38%), Positives = 59/115 (51%)
Frame = +1
Query: 94 MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 273
M ++K ELR K LRVAKVTGG +KLSKI+VVRK+IA+V V
Sbjct: 1 MARIKVHELREKSKADLSGQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60
Query: 274 YHQKMKVNLRNHYKNKKYKPLXFKSQEDPCYAQGSY*TRSKDQDEERDQKEISLP 438
QK K LR YKNKK PL + ++ + ++ + E +KE+ P
Sbjct: 61 ISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFP 115
Score = 51.2 bits (117), Expect = 9e-07
Identities = 22/39 (56%), Positives = 30/39 (76%)
Frame = +2
Query: 344 RAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYAVK 460
R KKTRA+R+ LTKH+A +KT +E +K+ FP R YA+K
Sbjct: 84 RPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYAIK 122
>At3g09500.1 68416.m01129 60S ribosomal protein L35 (RPL35A) similar
to 60S ribosomal protein L35 GB:AAC27830
Length = 123
Score = 72.5 bits (170), Expect = 4e-13
Identities = 44/115 (38%), Positives = 59/115 (51%)
Frame = +1
Query: 94 MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 273
M ++K ELR K LRVAKVTGG +KLSKI+VVRK+IA+V V
Sbjct: 1 MARIKVHELREKSKSDLQNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60
Query: 274 YHQKMKVNLRNHYKNKKYKPLXFKSQEDPCYAQGSY*TRSKDQDEERDQKEISLP 438
QK K LR YKNKK PL + ++ + ++ + E +KE+ P
Sbjct: 61 SSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFP 115
Score = 51.2 bits (117), Expect = 9e-07
Identities = 22/39 (56%), Positives = 30/39 (76%)
Frame = +2
Query: 344 RAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYAVK 460
R KKTRA+R+ LTKH+A +KT +E +K+ FP R YA+K
Sbjct: 84 RPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYAIK 122
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,563,160
Number of Sequences: 28952
Number of extensions: 191375
Number of successful extensions: 376
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2178500352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -