Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_H08
         (906 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17729| Best HMM Match : TPR_2 (HMM E-Value=0.41)                    28   9.0  
SB_6643| Best HMM Match : Antimicrobial_8 (HMM E-Value=0.27)           28   9.0  
SB_56456| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  

>SB_17729| Best HMM Match : TPR_2 (HMM E-Value=0.41)
          Length = 1234

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +1

Query: 592  NKMDYVKMMDGCLD-EKICYNYGIIKENEQFVMYANYSXSL 711
            NKM  +K +    D EKI +  G+ ++ E +VM ANY  SL
Sbjct: 1057 NKMKAMKALLKSGDTEKIVFFAGVSRQREIYVMAANYLQSL 1097


>SB_6643| Best HMM Match : Antimicrobial_8 (HMM E-Value=0.27)
          Length = 251

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 369 KNEGRSHRAVQAVLLCQRF*MFLQNSMLRQSL 464
           K+ GR+HRA   VL+ Q   M ++  ++ QSL
Sbjct: 211 KHHGRAHRAGDEVLVLQMMVMSIKMKLINQSL 242


>SB_56456| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1266

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 120 TESEGKKPRXKQDRXQGRSRRSELAKVXKEGPSRRGR 10
           T    K P  KQ++  GR R+SEL ++ +E   ++ R
Sbjct: 880 TRQGRKTPAPKQEKSAGRVRKSELTQLLEEVKEKQRR 916


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,128,019
Number of Sequences: 59808
Number of extensions: 455351
Number of successful extensions: 917
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2609867019
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)