Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_H07
         (898 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.9  
SB_59209| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.7  
SB_6261| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.7  

>SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1974

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 4/51 (7%)
 Frame = +3

Query: 159  HQRNLGTSSRKS----SAPWRGREMPSSAXXXXXXXXAQLPPSRPARPSTP 299
            H + LG  S       ++PW+ R+   S             PSRP  PS+P
Sbjct: 864  HMQELGADSESEEDEFASPWKRRQSKKSLSTFDRERLESTAPSRPTSPSSP 914


>SB_59209| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1002

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = +3

Query: 171 LGTSSRKSSAPWRGREMPSSAXXXXXXXXAQLPPSRPARPSTPVPITARRLT 326
           LG S  + ++PW     P++A        A +PPS  + PS   P T    T
Sbjct: 162 LGESRNEPTSPWSPVSTPNTAGGITGQDRAPIPPS--SSPSAQPPTTTSTTT 211


>SB_6261| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 303

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 357 GTVFP-LLIKSRELHWMKFVLRYKLHIEWVC 446
           GTV+P L++ S  +HW+   L   +HI   C
Sbjct: 101 GTVYPGLMVTSAAIHWVLNTLNITVHIRDTC 131


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,243,441
Number of Sequences: 59808
Number of extensions: 327421
Number of successful extensions: 838
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2574115416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)