Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_H07
         (898 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g05910.1 68414.m00620 cell division cycle protein 48-related ...    33   0.34 
At3g09000.1 68416.m01053 proline-rich family protein                   29   3.2  
At1g75520.1 68414.m08776 lateral root primordium (LRP) protein-r...    29   5.5  
At3g62180.1 68416.m06986 invertase/pectin methylesterase inhibit...    28   7.3  

>At1g05910.1 68414.m00620 cell division cycle protein 48-related /
           CDC48-related similar to SP|P54609 Cell division cycle
           protein 48 homolog {Arabidopsis thaliana}; contains Pfam
           profiles PF00004: ATPase AAA family, PF00439:
           Bromodomain
          Length = 1210

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 17/28 (60%), Positives = 19/28 (67%)
 Frame = -1

Query: 307 MGTGVLGLAGRDGGSCAYRRHRRTRADD 224
           MGT V G  GR GGS  ++RHR TR DD
Sbjct: 265 MGTRV-GRDGRRGGSRPHKRHRFTRTDD 291


>At3g09000.1 68416.m01053 proline-rich family protein
          Length = 541

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 14/54 (25%), Positives = 23/54 (42%)
 Frame = +3

Query: 156 PHQRNLGTSSRKSSAPWRGREMPSSAXXXXXXXXAQLPPSRPARPSTPVPITAR 317
           P      + S +S+ P R    PSSA           P  RP+ P+ P  ++++
Sbjct: 207 PRTTTTSSGSARSATPTRSNPRPSSASSKKPVSRPATPTRRPSTPTGPSIVSSK 260


>At1g75520.1 68414.m08776 lateral root primordium (LRP)
           protein-related similar to lateral root primordium 1
           (LRP1) [Arabidopsis thaliana] GI:882341; contains Pfam
           profile PF05142: Domain of unknown function (DUF702)
          Length = 346

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = -1

Query: 157 GRENNNEQEKYDSREIHFD--FSTKAGFEYRVRNNKYQNLKGIPI 29
           GR+NN+   K D  ++  D     K+ + Y  ++  Y N KG  I
Sbjct: 9   GRDNNSNNNKQDHHQVDKDHHHQDKSNYLYLYKDEIYNNNKGFEI 53


>At3g62180.1 68416.m06986 invertase/pectin methylesterase inhibitor
           family protein low similarity to pollen-specific pectin
           esterase from Brassica rapa subsp. pekinensis
           GI:1620652; contains Pfam profile PF04043: Plant
           invertase/pectin methylesterase inhibitor
          Length = 215

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +2

Query: 107 MNFTRIIFFLFVVVFATASAKP 172
           MN    +FFLF+ V ATA+AKP
Sbjct: 1   MNTPIKLFFLFIFVAATATAKP 22


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,702,640
Number of Sequences: 28952
Number of extensions: 231599
Number of successful extensions: 582
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2110422216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)