Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_H06
         (879 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15782| Best HMM Match : DUF845 (HMM E-Value=5.8)                    29   3.7  
SB_2235| Best HMM Match : Arf (HMM E-Value=3.1e-13)                    29   5.0  
SB_34234| Best HMM Match : Galactosyl_T (HMM E-Value=0.0098)           29   6.6  
SB_9094| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.6  

>SB_15782| Best HMM Match : DUF845 (HMM E-Value=5.8)
          Length = 283

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 183 GFEENLMRNWVCLVEHESSRDTSKTN 260
           GFEE + R W+   + E S D +KTN
Sbjct: 33  GFEEEVKRQWIGCDKLEGSNDITKTN 58


>SB_2235| Best HMM Match : Arf (HMM E-Value=3.1e-13)
          Length = 334

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 176 ETWLRRKSHEELGMSGRAREQP*HVQDEHEP 268
           E WL RK H E  +S   RE+   V+++H+P
Sbjct: 223 EAWLERKEHREDSLSEHEREE---VKNKHKP 250


>SB_34234| Best HMM Match : Galactosyl_T (HMM E-Value=0.0098)
          Length = 1028

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -3

Query: 178 FLSSCTRPHLVNVLASRTNAEDNQSEN-N*LLHFXRXFRVTV 56
           +L     P L NVL++RTN +  ++EN N    F +  +VTV
Sbjct: 31  WLRDIPSPGLTNVLSNRTNHKGERAENSNSSADFIKKIKVTV 72


>SB_9094| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 510

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 22/78 (28%), Positives = 35/78 (44%)
 Frame = +3

Query: 180 HGFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDYGLFQINDRYWCSKGASPGKDCNVK 359
           H  +   +++W+  +  E  RDT+      N      + ++N+  W  K     K  +VK
Sbjct: 53  HEADPVAVKSWLKKLSEEQFRDTADKYLRPNNCSHVVVPKVNEEIW-GKLTRQVKTKDVK 111

Query: 360 CSDLLTDDITKAAKCAKK 413
            S L T +ITKA   A K
Sbjct: 112 FSRLQT-NITKAGHIAVK 128


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,051,623
Number of Sequences: 59808
Number of extensions: 332513
Number of successful extensions: 717
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2502612210
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)