Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_H06
(879 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110487-11|CAC42369.1| 624|Caenorhabditis elegans Hypothetical... 29 4.4
AL110487-10|CAC42368.1| 623|Caenorhabditis elegans Hypothetical... 29 4.4
AL110487-9|CAB54435.1| 626|Caenorhabditis elegans Hypothetical ... 29 4.4
Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical pr... 28 7.7
Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical p... 28 7.7
Z50797-9|CAL36516.1| 640|Caenorhabditis elegans Hypothetical pr... 28 7.7
AF031837-1|AAC13673.1| 624|Caenorhabditis elegans GLY5c protein. 28 7.7
AF031836-1|AAC13672.1| 626|Caenorhabditis elegans GLY5b protein. 28 7.7
AF031835-1|AAC13671.1| 623|Caenorhabditis elegans GLY5a protein. 28 7.7
>AL110487-11|CAC42369.1| 624|Caenorhabditis elegans Hypothetical
protein Y39E4B.12c protein.
Length = 624
Score = 29.1 bits (62), Expect = 4.4
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +3
Query: 183 GFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDYGLFQINDRYWCSKGA-SPGKD 347
GF+ L NW + E + T + R+ + GLF I+ +Y+ G PG D
Sbjct: 319 GFDWGLQFNWHSIPERDRKNRTRPIDPVRSPTMAGGLFSIDKKYFEKLGTYDPGFD 374
>AL110487-10|CAC42368.1| 623|Caenorhabditis elegans Hypothetical
protein Y39E4B.12b protein.
Length = 623
Score = 29.1 bits (62), Expect = 4.4
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +3
Query: 183 GFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDYGLFQINDRYWCSKGA-SPGKD 347
GF+ L NW + E + T + R+ + GLF I+ +Y+ G PG D
Sbjct: 319 GFDWGLQFNWHSIPERDRKNRTRPIDPVRSPTMAGGLFSIDKKYFEKLGTYDPGFD 374
>AL110487-9|CAB54435.1| 626|Caenorhabditis elegans Hypothetical
protein Y39E4B.12a protein.
Length = 626
Score = 29.1 bits (62), Expect = 4.4
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +3
Query: 183 GFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDYGLFQINDRYWCSKGA-SPGKD 347
GF+ L NW + E + T + R+ + GLF I+ +Y+ G PG D
Sbjct: 319 GFDWGLQFNWHSIPERDRKNRTRPIDPVRSPTMAGGLFSIDKKYFEKLGTYDPGFD 374
>Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical protein
T22H6.6a protein.
Length = 1405
Score = 28.3 bits (60), Expect = 7.7
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Frame = -2
Query: 560 STQFCFEEIE---SKVYPEVHSGI*QLLISGKEXLAVVLPTVPGIEAVTFVNFLSAFRCL 390
S QF FE ++ + VYP + + L++ +LP + F+ SAFR L
Sbjct: 1023 SFQFDFESLKQGTAGVYPTFNPAMISTLVNSSTPCRQILPMYNTDISSFFLPTASAFRVL 1082
Query: 389 SNVVSQEVGALNVA 348
+ +S +G + A
Sbjct: 1083 NPTISSIIGGFSSA 1096
>Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical
protein T22H6.6a protein.
Length = 1405
Score = 28.3 bits (60), Expect = 7.7
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Frame = -2
Query: 560 STQFCFEEIE---SKVYPEVHSGI*QLLISGKEXLAVVLPTVPGIEAVTFVNFLSAFRCL 390
S QF FE ++ + VYP + + L++ +LP + F+ SAFR L
Sbjct: 1023 SFQFDFESLKQGTAGVYPTFNPAMISTLVNSSTPCRQILPMYNTDISSFFLPTASAFRVL 1082
Query: 389 SNVVSQEVGALNVA 348
+ +S +G + A
Sbjct: 1083 NPTISSIIGGFSSA 1096
>Z50797-9|CAL36516.1| 640|Caenorhabditis elegans Hypothetical
protein T22H6.6b protein.
Length = 640
Score = 28.3 bits (60), Expect = 7.7
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Frame = -2
Query: 560 STQFCFEEIE---SKVYPEVHSGI*QLLISGKEXLAVVLPTVPGIEAVTFVNFLSAFRCL 390
S QF FE ++ + VYP + + L++ +LP + F+ SAFR L
Sbjct: 258 SFQFDFESLKQGTAGVYPTFNPAMISTLVNSSTPCRQILPMYNTDISSFFLPTASAFRVL 317
Query: 389 SNVVSQEVGALNVA 348
+ +S +G + A
Sbjct: 318 NPTISSIIGGFSSA 331
>AF031837-1|AAC13673.1| 624|Caenorhabditis elegans GLY5c protein.
Length = 624
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +3
Query: 183 GFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDYGLFQINDRYWCSKGA-SPGKD 347
GF+ L NW + E + T + R+ + GLF I+ Y+ G PG D
Sbjct: 319 GFDWGLQFNWHSIPERDRKNRTRPIDPVRSPTMAGGLFSIDKEYFEKLGTYDPGFD 374
>AF031836-1|AAC13672.1| 626|Caenorhabditis elegans GLY5b protein.
Length = 626
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +3
Query: 183 GFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDYGLFQINDRYWCSKGA-SPGKD 347
GF+ L NW + E + T + R+ + GLF I+ Y+ G PG D
Sbjct: 319 GFDWGLQFNWHSIPERDRKNRTRPIDPVRSPTMAGGLFSIDKEYFEKLGTYDPGFD 374
>AF031835-1|AAC13671.1| 623|Caenorhabditis elegans GLY5a protein.
Length = 623
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +3
Query: 183 GFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDYGLFQINDRYWCSKGA-SPGKD 347
GF+ L NW + E + T + R+ + GLF I+ Y+ G PG D
Sbjct: 319 GFDWGLQFNWHSIPERDRKNRTRPIDPVRSPTMAGGLFSIDKEYFEKLGTYDPGFD 374
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,612,411
Number of Sequences: 27780
Number of extensions: 239768
Number of successful extensions: 575
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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