Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_H06
         (879 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    25   0.70 
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    25   0.70 
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    25   0.70 
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    25   0.70 
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    25   0.70 
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    25   0.92 
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    25   0.92 
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    25   0.92 
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    25   0.92 
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    25   0.92 

>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 25.4 bits (53), Expect = 0.70
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = +3

Query: 165 HELRKHGFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDY 287
           +E +K+    N +RN     +H SSR + + + +R+ +++Y
Sbjct: 205 NESKKYATSSNSLRNRTHGFQHTSSRYSRERSCSRDRNREY 245


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 25.4 bits (53), Expect = 0.70
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = +3

Query: 165 HELRKHGFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDY 287
           +E +K+    N +RN     +H SSR + + + +R+ +++Y
Sbjct: 194 NESKKYATSSNSLRNRTHGFQHTSSRYSRERSCSRDRNREY 234


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 25.4 bits (53), Expect = 0.70
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = +3

Query: 165 HELRKHGFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDY 287
           +E +K+    N +RN     +H SSR + + + +R+ +++Y
Sbjct: 210 NESKKYATSSNSLRNRTHGFQHTSSRYSRERSCSRDRNREY 250


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 25.4 bits (53), Expect = 0.70
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = +3

Query: 165 HELRKHGFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDY 287
           +E +K+    N +RN     +H SSR + + + +R+ +++Y
Sbjct: 205 NESKKYATSSNSLRNRTHGFQHTSSRYSRERSCSRDRNREY 245


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 25.4 bits (53), Expect = 0.70
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = +3

Query: 165 HELRKHGFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDY 287
           +E +K+    N +RN     +H SSR + + + +R+ +++Y
Sbjct: 205 NESKKYATSSNSLRNRTHGFQHTSSRYSRERSCSRDRNREY 245


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 25.0 bits (52), Expect = 0.92
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = +3

Query: 165 HELRKHGFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDY 287
           +E +K+    N +RN     +H SSR + +   +R+ +++Y
Sbjct: 205 NESKKYATSSNSLRNRTHDFQHTSSRYSRERRCSRDRNREY 245


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 25.0 bits (52), Expect = 0.92
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +3

Query: 168 ELRKHGFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDY 287
           E +K+    N +RN     +H SSR + + + +R+ +++Y
Sbjct: 195 ESKKYATSSNSLRNRTHGFQHTSSRYSRERSCSRDRNREY 234


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 25.0 bits (52), Expect = 0.92
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +3

Query: 168 ELRKHGFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDY 287
           E +K+    N +RN     +H SSR + + + +R+ +++Y
Sbjct: 206 ESKKYATSSNSLRNRTHGFQHTSSRYSRERSCSRDRNREY 245


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 25.0 bits (52), Expect = 0.92
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +3

Query: 168 ELRKHGFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDY 287
           E +K+    N +RN     +H SSR + + + +R+ +++Y
Sbjct: 206 ESKKYATSSNSLRNRTHGFQHTSSRYSRERSCSRDRNREY 245


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 25.0 bits (52), Expect = 0.92
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +3

Query: 168 ELRKHGFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDY 287
           E +K+    N +RN     +H SSR + + + +R+ +++Y
Sbjct: 195 ESKKYATSSNSLRNRTHGFQHTSSRYSRERSCSRDRNREY 234


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,751
Number of Sequences: 438
Number of extensions: 2867
Number of successful extensions: 17
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)