Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_H05
         (878 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    40   0.063
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h...    38   0.25 
UniRef50_UPI00015C63F8 Cluster: hypothetical protein CKO_pCKO3p0...    35   3.1  

>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 40.3 bits (90), Expect = 0.063
 Identities = 36/114 (31%), Positives = 43/114 (37%)
 Frame = +1

Query: 445 RXKXVCXLGXLPFPXSXTXCPRSFGCGXRXQLXQRX*YGYPQNQGIXQXKTFXQKAXKRP 624
           R   +C  G +P P S T   RSFGCG R +L            G        +K   + 
Sbjct: 26  RVSRICDTGDIPLPRSLTRYARSFGCGERYRL----------TDGDGNFLEDTRKTLSKE 75

Query: 625 ETVKRPLXWXFSIGSAPLNXHHKNRXSIXRWPXPDRXIXIPGXSPXKPPXCAXL 786
           E   RP    FSIGSAPL    K+   I       +    P   P   P CA L
Sbjct: 76  EI--RPRRSRFSIGSAPLTSIAKSDAQI-SGGETRQDYKDPRRFPLVAPSCALL 126


>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
           Alpha-hemolysin - Aeromonas hydrophila
          Length = 59

 Score = 38.3 bits (85), Expect = 0.25
 Identities = 22/40 (55%), Positives = 24/40 (60%)
 Frame = +3

Query: 477 SVSXLXXSLPXVXRXRQXVSAXXKXVIRLSXKSGDXPXKN 596
           S S L  SL  V R R+ VSA  K VIRLS +SGD   KN
Sbjct: 19  SASSLTDSLRSVVRLRRAVSAHSKAVIRLSTESGDNAGKN 58


>UniRef50_UPI00015C63F8 Cluster: hypothetical protein
           CKO_pCKO3p06146; n=1; Citrobacter koseri ATCC
           BAA-895|Rep: hypothetical protein CKO_pCKO3p06146 -
           Citrobacter koseri ATCC BAA-895
          Length = 125

 Score = 34.7 bits (76), Expect = 3.1
 Identities = 15/23 (65%), Positives = 17/23 (73%)
 Frame = +2

Query: 770 PXALSCSHPAXXRIPXPXFSPSG 838
           P ALSCS+PA  RIP P FS +G
Sbjct: 43  PLALSCSNPAVSRIPVPPFSLAG 65


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 405,811,307
Number of Sequences: 1657284
Number of extensions: 4650384
Number of successful extensions: 5142
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5136
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 78702453312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)