Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_H05
         (878 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0458 + 14280953-14281866,14281964-14282912                       31   0.92 
04_03_0380 - 15150814-15152304                                         29   3.7  
04_03_0348 + 14735581-14737071                                         29   3.7  

>05_03_0458 + 14280953-14281866,14281964-14282912
          Length = 620

 Score = 31.5 bits (68), Expect = 0.92
 Identities = 16/31 (51%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +2

Query: 746 QAFPPXNPPXALSCS-HPAXXRIPXPXFSPS 835
           Q  PP  PP  LSCS HP     P P  SPS
Sbjct: 72  QPTPPPLPPTTLSCSSHPTPPPPPSPTTSPS 102


>04_03_0380 - 15150814-15152304
          Length = 496

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = -3

Query: 870 RGEVXEKXXXFPEGEKXGXGIRXXAGWEQXSAXGGFXGGXA 748
           RGEV        EGEK     R  AGW++ +A     GG A
Sbjct: 432 RGEVAALIREAMEGEKGAEMRRRAAGWKEAAARAARPGGPA 472


>04_03_0348 + 14735581-14737071
          Length = 496

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = -3

Query: 870 RGEVXEKXXXFPEGEKXGXGIRXXAGWEQXSAXGGFXGGXA 748
           RGEV        EGEK     R  AGW++ +A     GG A
Sbjct: 432 RGEVAALIREAMEGEKGAEMRRRAAGWKEAAARAARPGGPA 472


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,924,123
Number of Sequences: 37544
Number of extensions: 164541
Number of successful extensions: 234
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)