Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_H02
(911 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g58040.1 68418.m07263 fip1 motif-containing protein contains ... 32 0.61
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 31 0.80
At1g24220.1 68414.m03054 paired amphipathic helix repeat-contain... 31 0.80
At3g50230.1 68416.m05493 leucine-rich repeat transmembrane prote... 29 3.2
At3g19830.1 68416.m02512 C2 domain-containing protein low simila... 29 3.2
At1g68170.1 68414.m07787 nodulin MtN21 family protein similar to... 29 4.3
At5g45050.2 68418.m05524 disease resistance protein-related simi... 29 5.7
At5g45050.1 68418.m05523 disease resistance protein-related simi... 29 5.7
At3g55480.2 68416.m06162 adaptin family protein similar to AP-3 ... 29 5.7
At3g55480.1 68416.m06161 adaptin family protein similar to AP-3 ... 29 5.7
At3g20830.1 68416.m02634 protein kinase family protein contains ... 28 7.5
At1g50260.1 68414.m05635 C2 domain-containing protein low simila... 28 7.5
At5g20380.1 68418.m02424 transporter-related low similarity to v... 28 9.9
At3g50370.1 68416.m05508 expressed protein 28 9.9
>At5g58040.1 68418.m07263 fip1 motif-containing protein contains Pfam
profile PF05182: Fip1 motif
Length = 1192
Score = 31.9 bits (69), Expect = 0.61
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = -1
Query: 800 NGGFVHTAQLGANDXH--RTEIPTA*AMRKRHASRREKGGQVSGKRQGRNR 654
NG V T G ND R+EIP KRH G ++ ++GR +
Sbjct: 1003 NGSSVVTGSKGTNDARNCRSEIPHQPNTAKRHKENASSGDEIHDSKRGRTK 1053
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 31.5 bits (68), Expect = 0.80
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Frame = -1
Query: 803 LNGGFVHTAQLGANDXHR----TEIPTA*AMRKRHASRREKGGQVSGKRQGRNRRAHEGA 636
+ GG +H + D P A R RH+ R +GG+ S R R R + GA
Sbjct: 546 IGGGNIHVEESRPRDSDEGRSSNRAPARGAPRGRHSDRAPRGGRFS-DRAPRGRHSDRGA 604
Query: 635 SRGK 624
RG+
Sbjct: 605 PRGR 608
>At1g24220.1 68414.m03054 paired amphipathic helix repeat-containing
protein weak similarity to transcription co-repressor
Sin3 [Xenopus laevis] GI:4960210; contains Pfam profile
PF02671: Paired amphipathic helix repeat
Length = 744
Score = 31.5 bits (68), Expect = 0.80
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = -2
Query: 463 SCVIPLILWITVLPPLSELIPLAAAERPXXXXXXXXXXXXXQYANRLSPRVGRFI--NAE 290
S IP+ L IT++PP + + A++P + N+L P+ R I AE
Sbjct: 260 SRTIPVKLKITIIPPKARRTIPSEADKP-------THTDELNFMNKLPPKRRRTIPSEAE 312
Query: 289 KTSHTSXLNLKHKM 248
K +HT LN +K+
Sbjct: 313 KPTHTDELNFMNKL 326
>At3g50230.1 68416.m05493 leucine-rich repeat transmembrane protein
kinase, putative receptor-like protein kinase (RKL1),
Arabidopsis thaliana, EMBL:AF084034
Length = 660
Score = 29.5 bits (63), Expect = 3.2
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 642 LVRSPVPTLPLTGYLSAFLPSGSVAL 719
L+R +LP T Y +FLPS +VAL
Sbjct: 15 LLRISTASLPATNYFDSFLPSDAVAL 40
>At3g19830.1 68416.m02512 C2 domain-containing protein low
similarity to GLUT4 vesicle protein [Rattus norvegicus]
GI:4193489; contains Pfam profile PF00168: C2 domain
Length = 666
Score = 29.5 bits (63), Expect = 3.2
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 489 KRPGTVKRPRCWRFSIGSAPLNEHHKNRRSSQR 587
K+P V+R +FS+G PL+ + RR+S+R
Sbjct: 238 KKPDYVQRVEIKQFSLGDEPLSVRNVERRTSRR 270
>At1g68170.1 68414.m07787 nodulin MtN21 family protein similar to
MtN21 GI:2598575 (root nodule development) from
[Medicago truncatula]
Length = 356
Score = 29.1 bits (62), Expect = 4.3
Identities = 20/46 (43%), Positives = 25/46 (54%)
Frame = -2
Query: 529 KRQQRGLFTVPGLLLAFCSHVLSCVIPLILWITVLPPLSELIPLAA 392
+R++R FT +LLA S +L VIP IL IT L S AA
Sbjct: 54 QRKKRPEFTCRLMLLALLSGLLGVVIPSILTITGLALTSATFTSAA 99
>At5g45050.2 68418.m05524 disease resistance protein-related similar
to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
profiles PF03106: WRKY DNA -binding domain, PF00931:
NB-ARC domain, PF00560: Leucine Rich Repeat
Length = 1344
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +2
Query: 350 PLPRSLTRCARSFGCGERYQLTQRR 424
P PRS RCA S GC R Q+ + R
Sbjct: 1169 PYPRSYYRCASSKGCFARKQVERSR 1193
>At5g45050.1 68418.m05523 disease resistance protein-related similar
to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
profiles PF03106: WRKY DNA -binding domain, PF00931:
NB-ARC domain, PF00560: Leucine Rich Repeat
Length = 1372
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +2
Query: 350 PLPRSLTRCARSFGCGERYQLTQRR 424
P PRS RCA S GC R Q+ + R
Sbjct: 1197 PYPRSYYRCASSKGCFARKQVERSR 1221
>At3g55480.2 68416.m06162 adaptin family protein similar to AP-3
complex beta3A subunit, Homo sapiens, SP|O00203; contains
Pfam profile: PF01602 Adaptin N terminal region
Length = 987
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = -2
Query: 496 GLLLAFCSHVLSCVIPLILWITVLPPLSELIPL 398
GL L F S +LS IPL++ ITV +E++ L
Sbjct: 924 GLRLRFSSKILSSEIPLLITITVEGKCTEVLNL 956
>At3g55480.1 68416.m06161 adaptin family protein similar to AP-3
complex beta3A subunit, Homo sapiens, SP|O00203; contains
Pfam profile: PF01602 Adaptin N terminal region
Length = 987
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = -2
Query: 496 GLLLAFCSHVLSCVIPLILWITVLPPLSELIPL 398
GL L F S +LS IPL++ ITV +E++ L
Sbjct: 924 GLRLRFSSKILSSEIPLLITITVEGKCTEVLNL 956
>At3g20830.1 68416.m02634 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 408
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -1
Query: 341 PIRKPPLPARWPIH*CRKNLPHL 273
P PP P R P H CRKN P +
Sbjct: 384 PSSAPPSPLRSPPHVCRKNDPFI 406
>At1g50260.1 68414.m05635 C2 domain-containing protein low
similarity to CLB1 [Lycopersicon esculentum] GI:2789434;
contains Pfam profile PF00168: C2 domain
Length = 675
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +3
Query: 489 KRPGTVKRPRCWRFSIGSAPLNEHHKNRRSSQR 587
K+P V+R +FS+G PL+ + R++S+R
Sbjct: 226 KKPDYVQRVEIKQFSLGDEPLSVRNVERKTSRR 258
>At5g20380.1 68418.m02424 transporter-related low similarity to
vesicular glutamate transporter 3 [Rattus norvegicus]
GI:21685382
Length = 517
Score = 27.9 bits (59), Expect = 9.9
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = -2
Query: 514 GLFTVPGLLLAFCSHVLSCVIPLILWITVLPPLSELIPLAAAER 383
G +T L + S LS + W+++LPPL+ ++ + A +
Sbjct: 332 GHYTCLSWLPTYFSEALSLNLTEAAWVSILPPLASIVVTSLASQ 375
>At3g50370.1 68416.m05508 expressed protein
Length = 2179
Score = 27.9 bits (59), Expect = 9.9
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 539 LRPPERASQKSTLKSEVAKPDRTIKIPGVS 628
L PP+ + QK++ +SEV P + I G++
Sbjct: 794 LPPPQESRQKTSFRSEVEHPGPSTSIGGIN 823
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,988,525
Number of Sequences: 28952
Number of extensions: 344212
Number of successful extensions: 913
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2159049456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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