Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_H01
(897 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0) 216 2e-56
SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0) 174 9e-44
SB_54786| Best HMM Match : Ribosomal_S12 (HMM E-Value=1.4e-12) 36 0.059
SB_33690| Best HMM Match : Fer4 (HMM E-Value=2.1) 32 0.72
SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13) 28 8.9
SB_4381| Best HMM Match : RVT_1 (HMM E-Value=3) 28 8.9
SB_3221| Best HMM Match : rve (HMM E-Value=3) 28 8.9
>SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
Length = 413
Score = 216 bits (527), Expect = 2e-56
Identities = 96/116 (82%), Positives = 108/116 (93%)
Frame = +3
Query: 96 KPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQP 275
KPRG+RTARK +HRR+Q+W DK +KKAH+GT KANPFGGASHAKGIVLEKVGVEAKQP
Sbjct: 2 KPRGLRTARKLRSHRRDQKWHDKAYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQP 61
Query: 276 NSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDXPGV 443
NSAIRKCVRVQLIKNGKK+TAFVP DGCLN+IEENDEVL++GFGR+GHAVGD PG+
Sbjct: 62 NSAIRKCVRVQLIKNGKKITAFVPNDGCLNYIEENDEVLISGFGRRGHAVGDIPGI 117
>SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
Length = 143
Score = 174 bits (423), Expect = 9e-44
Identities = 80/91 (87%), Positives = 88/91 (96%)
Frame = +3
Query: 246 EKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAV 425
++ GVEAKQPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN+IEENDEVL++GFGR+GHAV
Sbjct: 53 QEPGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNYIEENDEVLISGFGRRGHAV 112
Query: 426 GDXPGVRFKVVKVANVSLLALYKEKKERPRS 518
GD PGVRFKVVKVANVSLLAL+KEKKERPRS
Sbjct: 113 GDIPGVRFKVVKVANVSLLALFKEKKERPRS 143
>SB_54786| Best HMM Match : Ribosomal_S12 (HMM E-Value=1.4e-12)
Length = 302
Score = 35.5 bits (78), Expect = 0.059
Identities = 16/39 (41%), Positives = 27/39 (69%)
Frame = +3
Query: 231 KGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVP 347
KG+ ++ + K+PNSA RKC ++L NGK ++A++P
Sbjct: 230 KGVCVKVFIRKPKKPNSAQRKCALLKL-SNGKTISAYIP 267
>SB_33690| Best HMM Match : Fer4 (HMM E-Value=2.1)
Length = 488
Score = 31.9 bits (69), Expect = 0.72
Identities = 25/79 (31%), Positives = 31/79 (39%), Gaps = 5/79 (6%)
Frame = -3
Query: 313 MSCTRTHLRMAELGCLASTPTFSR-----TMPFA*DAPPKGLAFHFVPMWAFLNSLSAHR 149
M C + E+ C PT R T DA P GL H M L+ + R
Sbjct: 58 MPCQLDYPNYREMPCQLDCPTTERCPANWTTQLQRDALPTGLPKHR-EMPCQLDYPTTER 116
Query: 148 CSRRWFTCLRAVRIPRGLP 92
C W T L+ +P GLP
Sbjct: 117 CPANWTTQLQRDALPTGLP 135
Score = 29.1 bits (62), Expect = 5.1
Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Frame = -3
Query: 280 ELGCLASTPTFSR-----TMPFA*DAPPKGLAFHFVPMWAFLNSLSAHRCSRRWFTCLRA 116
E+ C PT R T DA P GL ++ M L+ + RC W T L+
Sbjct: 139 EMPCQLDYPTTERCPANWTTQLQRDALPTGLP-NYREMSCQLDYPTTERCPANWTTQLQR 197
Query: 115 VRIPRGLP 92
+P GLP
Sbjct: 198 DTLPTGLP 205
Score = 28.7 bits (61), Expect = 6.7
Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Frame = -3
Query: 280 ELGCLASTPTFSR-----TMPFA*DAPPKGLAFHFVPMWAFLNSLSAHRCSRRWFTCLRA 116
E+ C PT R T DA P GL ++ M L+ + RC W T L+
Sbjct: 104 EMPCQLDYPTTERCPANWTTQLQRDALPTGLP-NYREMPCQLDYPTTERCPANWTTQLQR 162
Query: 115 VRIPRGLP 92
+P GLP
Sbjct: 163 DALPTGLP 170
>SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 468
Score = 29.1 bits (62), Expect = 5.1
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +2
Query: 176 SPHGYEMEG*PFRWCISRKGHRPRESWCRS*AA 274
S HG MEG P W +S G P+ S C S +A
Sbjct: 85 SQHGTRMEGVPVCWYVSVWGLSPQVSQCDSVSA 117
>SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13)
Length = 943
Score = 28.3 bits (60), Expect = 8.9
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Frame = -3
Query: 244 RTMPFA*D-APPKGLAFHFVPMW-AFLN-SLSAHR 149
R +PF+ APPKG F VP+W +F N S+ HR
Sbjct: 902 RKVPFSSVLAPPKGYRFLIVPLWRSFSNRSVFGHR 936
>SB_4381| Best HMM Match : RVT_1 (HMM E-Value=3)
Length = 471
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = -2
Query: 356 TVTGDECGHFLSVLNELYTDAFADGRVGLLSFYTNFLED 240
T D+ F NE AD R GL+ NF+ED
Sbjct: 159 TTDPDKLNRFFVTTNERTLGTKADDRSGLIELVNNFVED 197
>SB_3221| Best HMM Match : rve (HMM E-Value=3)
Length = 324
Score = 28.3 bits (60), Expect = 8.9
Identities = 23/70 (32%), Positives = 33/70 (47%)
Frame = -3
Query: 541 SLITMYTYDLGRSFFSL*RARRDTLATFTTLKRTPGXSPTA*PLRPNPATSTSSFSSMWF 362
S T TYDL SF+S+ + + LAT +K++P + L+P A S S
Sbjct: 9 SFDTFPTYDLA-SFYSVLCSGDEQLATIKLMKKSPSLFQKSHTLKPR-ANCASIASETLA 66
Query: 361 RQPSRGTNAV 332
+Q R N V
Sbjct: 67 QQCWRSLNTV 76
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,435,861
Number of Sequences: 59808
Number of extensions: 476714
Number of successful extensions: 878
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2574115416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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