Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_H01
(897 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D14530-1|BAA03400.1| 143|Homo sapiens yeast ribosomal protein S... 265 2e-70
CR456996-1|CAG33277.1| 143|Homo sapiens RPS23 protein. 265 2e-70
BC070221-1|AAH70221.1| 143|Homo sapiens ribosomal protein S23 p... 265 2e-70
AB007158-1|BAA25822.1| 59|Homo sapiens ribosomal protein S23 p... 117 7e-26
Y11681-2|CAA72377.1| 138|Homo sapiens mitochondrial ribosomal p... 53 2e-06
CR407609-1|CAG28537.1| 138|Homo sapiens MRPS12 protein. 53 2e-06
BC007499-1|AAH07499.1| 138|Homo sapiens mitochondrial ribosomal... 53 2e-06
BC006424-1|AAH06424.1| 138|Homo sapiens mitochondrial ribosomal... 53 2e-06
BC001617-1|AAH01617.1| 138|Homo sapiens mitochondrial ribosomal... 53 2e-06
AF058761-1|AAC64704.1| 138|Homo sapiens ribosomal protein S12 p... 53 2e-06
AF113616-1|AAF13032.1| 1217|Homo sapiens intestinal mucin 3 prot... 32 2.5
AF007194-1|AAC02272.1| 957|Homo sapiens mucin protein. 32 2.5
AB038784-1|BAB12118.1| 877|Homo sapiens intestinal mucin protein. 32 2.5
AB038782-1|BAB12116.1| 878|Homo sapiens intestinal mucin protein. 32 2.5
AJ291390-1|CAC19572.1| 901|Homo sapiens MUC3B mucin protein. 31 5.7
AB038783-1|BAB12117.1| 878|Homo sapiens intestinal mucin protein. 31 5.7
AB038781-1|BAB12115.1| 878|Homo sapiens intestinal mucin protein. 31 5.7
>D14530-1|BAA03400.1| 143|Homo sapiens yeast ribosomal protein S28
homologue protein.
Length = 143
Score = 265 bits (649), Expect = 2e-70
Identities = 125/143 (87%), Positives = 133/143 (93%)
Frame = +3
Query: 90 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 269
MGK RG+RTARK +HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVLEKVGVEAK
Sbjct: 1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 60
Query: 270 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDXPGVRF 449
QPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN IEENDEVLVAGFGRKGHAVGD PGVRF
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF 120
Query: 450 KVVKVANVSLLALYKEKKERPRS 518
KVVKVANVSLLALYK KKERPRS
Sbjct: 121 KVVKVANVSLLALYKGKKERPRS 143
>CR456996-1|CAG33277.1| 143|Homo sapiens RPS23 protein.
Length = 143
Score = 265 bits (649), Expect = 2e-70
Identities = 125/143 (87%), Positives = 133/143 (93%)
Frame = +3
Query: 90 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 269
MGK RG+RTARK +HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVLEKVGVEAK
Sbjct: 1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 60
Query: 270 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDXPGVRF 449
QPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN IEENDEVLVAGFGRKGHAVGD PGVRF
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF 120
Query: 450 KVVKVANVSLLALYKEKKERPRS 518
KVVKVANVSLLALYK KKERPRS
Sbjct: 121 KVVKVANVSLLALYKGKKERPRS 143
>BC070221-1|AAH70221.1| 143|Homo sapiens ribosomal protein S23
protein.
Length = 143
Score = 265 bits (649), Expect = 2e-70
Identities = 125/143 (87%), Positives = 133/143 (93%)
Frame = +3
Query: 90 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 269
MGK RG+RTARK +HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVLEKVGVEAK
Sbjct: 1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 60
Query: 270 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDXPGVRF 449
QPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN IEENDEVLVAGFGRKGHAVGD PGVRF
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF 120
Query: 450 KVVKVANVSLLALYKEKKERPRS 518
KVVKVANVSLLALYK KKERPRS
Sbjct: 121 KVVKVANVSLLALYKGKKERPRS 143
>AB007158-1|BAA25822.1| 59|Homo sapiens ribosomal protein S23
protein.
Length = 59
Score = 117 bits (281), Expect = 7e-26
Identities = 55/59 (93%), Positives = 55/59 (93%)
Frame = +3
Query: 339 FVPRDGCLNHIEENDEVLVAGFGRKGHAVGDXPGVRFKVVKVANVSLLALYKEKKERPR 515
FVP DGCLN IEENDEVLVAGFGRKGHAVGD PGVRFKVVKVANVSLLALYK KKERPR
Sbjct: 1 FVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPR 59
>Y11681-2|CAA72377.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 precursor protein.
Length = 138
Score = 52.8 bits (121), Expect = 2e-06
Identities = 35/88 (39%), Positives = 49/88 (55%)
Frame = +3
Query: 198 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEE 377
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 378 NDEVLVAGFGRKGHAVGDXPGVRFKVVK 461
+ VLV G GR D PGV+ VV+
Sbjct: 105 HQIVLVEG-GR----TQDLPGVKLTVVR 127
>CR407609-1|CAG28537.1| 138|Homo sapiens MRPS12 protein.
Length = 138
Score = 52.8 bits (121), Expect = 2e-06
Identities = 35/88 (39%), Positives = 49/88 (55%)
Frame = +3
Query: 198 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEE 377
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 378 NDEVLVAGFGRKGHAVGDXPGVRFKVVK 461
+ VLV G GR D PGV+ VV+
Sbjct: 105 HQIVLVEG-GR----TQDLPGVKLTVVR 127
>BC007499-1|AAH07499.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 52.8 bits (121), Expect = 2e-06
Identities = 35/88 (39%), Positives = 49/88 (55%)
Frame = +3
Query: 198 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEE 377
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 378 NDEVLVAGFGRKGHAVGDXPGVRFKVVK 461
+ VLV G GR D PGV+ VV+
Sbjct: 105 HQIVLVEG-GR----TQDLPGVKLTVVR 127
>BC006424-1|AAH06424.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 52.8 bits (121), Expect = 2e-06
Identities = 35/88 (39%), Positives = 49/88 (55%)
Frame = +3
Query: 198 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEE 377
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 378 NDEVLVAGFGRKGHAVGDXPGVRFKVVK 461
+ VLV G GR D PGV+ VV+
Sbjct: 105 HQIVLVEG-GR----TQDLPGVKLTVVR 127
>BC001617-1|AAH01617.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 52.8 bits (121), Expect = 2e-06
Identities = 35/88 (39%), Positives = 49/88 (55%)
Frame = +3
Query: 198 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEE 377
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 378 NDEVLVAGFGRKGHAVGDXPGVRFKVVK 461
+ VLV G GR D PGV+ VV+
Sbjct: 105 HQIVLVEG-GR----TQDLPGVKLTVVR 127
>AF058761-1|AAC64704.1| 138|Homo sapiens ribosomal protein S12
protein.
Length = 138
Score = 52.8 bits (121), Expect = 2e-06
Identities = 35/88 (39%), Positives = 49/88 (55%)
Frame = +3
Query: 198 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEE 377
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 378 NDEVLVAGFGRKGHAVGDXPGVRFKVVK 461
+ VLV G GR D PGV+ VV+
Sbjct: 105 HQIVLVEG-GR----TQDLPGVKLTVVR 127
>AF113616-1|AAF13032.1| 1217|Homo sapiens intestinal mucin 3
protein.
Length = 1217
Score = 32.3 bits (70), Expect = 2.5
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Frame = -3
Query: 457 TTLKRTPGXSPTA*PLRPNPATSTSSFSSMWFRQPSRGTNAV--TFFPFLMSCTRTHLRM 284
+TL+ TP P TSTS F++ F + S TNA+ +F + S T T +
Sbjct: 531 STLQTTPST-----PSLQTSLTSTSEFTTESFTRGSTSTNAILTSFSTIIWSSTPTIIMS 585
Query: 283 AELGCLASTPTFSRTM 236
+ + TP FS T+
Sbjct: 586 SSPSSASITPVFSTTI 601
>AF007194-1|AAC02272.1| 957|Homo sapiens mucin protein.
Length = 957
Score = 32.3 bits (70), Expect = 2.5
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Frame = -3
Query: 457 TTLKRTPGXSPTA*PLRPNPATSTSSFSSMWFRQPSRGTNAV--TFFPFLMSCTRTHLRM 284
+TL+ TP P TSTS F++ F + S TNA+ +F + S T T +
Sbjct: 531 STLQTTPST-----PSLQTSLTSTSEFTTESFTRGSTSTNAILTSFSTIIWSSTPTIIMS 585
Query: 283 AELGCLASTPTFSRTM 236
+ + TP FS T+
Sbjct: 586 SSPSSASITPVFSTTI 601
>AB038784-1|BAB12118.1| 877|Homo sapiens intestinal mucin protein.
Length = 877
Score = 32.3 bits (70), Expect = 2.5
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Frame = -3
Query: 457 TTLKRTPGXSPTA*PLRPNPATSTSSFSSMWFRQPSRGTNAV--TFFPFLMSCTRTHLRM 284
+TL+ TP P TSTS F++ F + S TNA+ +F + S T T +
Sbjct: 191 STLQTTPST-----PSLQTSLTSTSEFTTESFTRGSTSTNAILTSFSTIIWSSTPTIIMS 245
Query: 283 AELGCLASTPTFSRTM 236
+ + TP FS T+
Sbjct: 246 SSPSSASITPVFSTTI 261
>AB038782-1|BAB12116.1| 878|Homo sapiens intestinal mucin protein.
Length = 878
Score = 32.3 bits (70), Expect = 2.5
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Frame = -3
Query: 457 TTLKRTPGXSPTA*PLRPNPATSTSSFSSMWFRQPSRGTNAV--TFFPFLMSCTRTHLRM 284
+TL+ TP P TSTS F++ F + S TNA+ +F + S T T +
Sbjct: 191 STLQTTPST-----PSLQTSLTSTSEFTTESFTRGSTSTNAILTSFSTIIWSSTPTIIMS 245
Query: 283 AELGCLASTPTFSRTM 236
+ + TP FS T+
Sbjct: 246 SSPSSASITPVFSTTI 261
>AJ291390-1|CAC19572.1| 901|Homo sapiens MUC3B mucin protein.
Length = 901
Score = 31.1 bits (67), Expect = 5.7
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Frame = -3
Query: 457 TTLKRTPGXSPTA*PLRPNPATSTSSFSSMWFRQPSRGTNAV--TFFPFLMSCTRTHLRM 284
+TL+ TP P TSTS F++ F + S TNA+ +F + S T T +
Sbjct: 215 STLQTTPSI-----PSLQTSLTSTSEFTTESFTRGSTSTNAILTSFSTIIWSSTPTIIMS 269
Query: 283 AELGCLASTPTFSRTM 236
+ + TP F+ T+
Sbjct: 270 SSPSSASITPVFATTI 285
>AB038783-1|BAB12117.1| 878|Homo sapiens intestinal mucin protein.
Length = 878
Score = 31.1 bits (67), Expect = 5.7
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Frame = -3
Query: 457 TTLKRTPGXSPTA*PLRPNPATSTSSFSSMWFRQPSRGTNAV--TFFPFLMSCTRTHLRM 284
+TL+ TP P TSTS F++ F + S TNA+ +F + S T T +
Sbjct: 192 STLQTTPSI-----PSLQTSLTSTSEFTTESFTRGSTSTNAILTSFSTIIWSSTPTIIMS 246
Query: 283 AELGCLASTPTFSRTM 236
+ + TP F+ T+
Sbjct: 247 SSPSSASITPVFATTI 262
>AB038781-1|BAB12115.1| 878|Homo sapiens intestinal mucin protein.
Length = 878
Score = 31.1 bits (67), Expect = 5.7
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Frame = -3
Query: 457 TTLKRTPGXSPTA*PLRPNPATSTSSFSSMWFRQPSRGTNAV--TFFPFLMSCTRTHLRM 284
+TL+ TP P TSTS F++ F + S TNA+ +F + S T T +
Sbjct: 192 STLQTTPSI-----PSLQTSLTSTSEFTTESFTRGSTSTNAILTSFSTIIWSSTPTIIMS 246
Query: 283 AELGCLASTPTFSRTM 236
+ + TP F+ T+
Sbjct: 247 SSPSSASITPVFATTI 262
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,994,381
Number of Sequences: 237096
Number of extensions: 2184951
Number of successful extensions: 6321
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 6211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6321
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11548247776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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