Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_G23
(928 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 31 0.17
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.23
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 24 0.80
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 1.2
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 1.6
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 24 1.6
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 2.8
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 3.8
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 31.5 bits (68), Expect = 0.17
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +2
Query: 827 PXPPXSXXPPPPXPPPXPXXXXXPPXXP 910
P PP PPPP PP P P P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
Score = 27.1 bits (57), Expect = 3.8
Identities = 13/34 (38%), Positives = 13/34 (38%), Gaps = 3/34 (8%)
Frame = +2
Query: 833 PPXSXXPPPPXPP---PXPXXXXXPPXXPXXXPP 925
PP P PP PP P P P P PP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPP 1732
Score = 27.1 bits (57), Expect = 3.8
Identities = 11/33 (33%), Positives = 12/33 (36%)
Frame = +1
Query: 826 PXPXXLXXPPXPXPSPXXXPXPXPPXXPXPXPP 924
P P + PP P P P PP P P
Sbjct: 1709 PPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.1 bits (67), Expect = 0.23
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +2
Query: 827 PXPPXSXXPPPPXPPPXPXXXXXPPXXP 910
P P PPPP PPP PP P
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 29.5 bits (63), Expect = 0.70
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = +1
Query: 826 PXPXXLXXPPXPXPSPXXXPXPXPPXXPXPXPP 924
P P + P P P P P P P P PP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767
Score = 29.1 bits (62), Expect = 0.93
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = +2
Query: 833 PPXSXXPPPPXPPPXPXXXXXPPXXPXXXPP 925
PP PP PPP P P P PP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = +1
Query: 826 PXPXXLXXPPXPXPSPXXXPXPXPPXXPXPXPP 924
P P P P P+P P P P P PP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP 765
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = +2
Query: 827 PXPPXSXXPPPPXPPPXPXXXXXPPXXPXXXP 922
P P PPP PPP PP P P
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 24.2 bits (50), Expect(2) = 0.80
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +2
Query: 842 SXXPPPPXPPP 874
S PPPP PPP
Sbjct: 367 SYSPPPPPPPP 377
Score = 23.4 bits (48), Expect(2) = 0.80
Identities = 9/24 (37%), Positives = 9/24 (37%)
Frame = +2
Query: 854 PPPXPPPXPXXXXXPPXXPXXXPP 925
PPP PPP P P P
Sbjct: 370 PPPPPPPPELLNHSPKSRPLGDKP 393
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 28.7 bits (61), Expect = 1.2
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +2
Query: 851 PPPPXPPPXPXXXXXPPXXPXXXPP 925
PP PPP P PP P PP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPP 29
Score = 28.3 bits (60), Expect = 1.6
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +2
Query: 833 PPXSXXPPPPXPPPXPXXXXXPPXXP 910
PP + PPPP P P PP P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 27.5 bits (58), Expect = 2.8
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +1
Query: 850 PPXPXPSPXXXPXPXPPXXPXP 915
PP P P P P PP P P
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPP 30
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = +2
Query: 842 SXXPPPPXPPPXPXXXXXPPXXPXXXPP 925
S P P PPP P P P PP
Sbjct: 3 SLPPGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 26.2 bits (55), Expect = 6.6
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = +2
Query: 827 PXPPXSXXPPPPXPPPXP 880
P PP PP PPP P
Sbjct: 12 PPPPPGFEPPSQPPPPPP 29
Score = 25.8 bits (54), Expect = 8.7
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = +2
Query: 827 PXPPXSXXPPPPXPPPXP 880
P PP PP PPP P
Sbjct: 11 PPPPPPGFEPPSQPPPPP 28
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = +1
Query: 826 PXPXXLXXPPXPXPSPXXXPXPXPPXXPXPXP 921
P P PP P PS P P P P P
Sbjct: 1209 PVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVP 1240
Score = 27.9 bits (59), Expect = 2.1
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +1
Query: 850 PPXPXPSPXXXPXPXPPXXPXPXPP 924
PP P PS P P P P PP
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVPP 1193
Score = 27.5 bits (58), Expect = 2.8
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = +1
Query: 826 PXPXXLXXPPXPXPSPXXXPXPXPPXXPXPXP 921
P P PP P PS P P P P P
Sbjct: 1084 PVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVP 1115
Score = 27.5 bits (58), Expect = 2.8
Identities = 13/29 (44%), Positives = 13/29 (44%), Gaps = 4/29 (13%)
Frame = +2
Query: 827 PXPPXSXXPPPPXP----PPXPXXXXXPP 901
P PP S PP P P PP P PP
Sbjct: 1190 PVPPPSEAPPVPKPSVGVPPVPPPSTAPP 1218
Score = 27.1 bits (57), Expect = 3.8
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = +1
Query: 826 PXPXXLXXPPXPXPSPXXXPXPXPPXXPXPXP 921
P P PP P PS P P P P P P
Sbjct: 1113 PVPAPSGAPPVPKPSVAAPPVPVPSGAP-PVP 1143
Score = 27.1 bits (57), Expect = 3.8
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = +1
Query: 826 PXPXXLXXPPXPXPSPXXXPXPXPPXXPXPXP 921
P P PP P PS P P P P P P
Sbjct: 1132 PVPVPSGAPPVPKPSVAAPPVPAPSGAP-PVP 1162
Score = 27.1 bits (57), Expect = 3.8
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = +1
Query: 826 PXPXXLXXPPXPXPSPXXXPXPXPPXXPXPXP 921
P P PP P PS P P P P P
Sbjct: 1151 PVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVP 1182
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 23.8 bits (49), Expect(2) = 1.6
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = +2
Query: 833 PPXSXXPPPPXPPP 874
P PPPP PPP
Sbjct: 184 PSDYNPPPPPPPPP 197
Score = 22.6 bits (46), Expect(2) = 1.6
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +2
Query: 851 PPPPXPPPXP 880
PPPP PP P
Sbjct: 238 PPPPPPPTLP 247
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.5 bits (58), Expect = 2.8
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +2
Query: 833 PPXSXXPPPPXPPPXPXXXXXPPXXP 910
P S PPP PPP PP P
Sbjct: 246 PSLSAPAPPPIPPPSNGTVSSPPNSP 271
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.1 bits (57), Expect = 3.8
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +2
Query: 833 PPXSXXPPPPXPPPXPXXXXXPPXXPXXXPP 925
PP S P P PPP P P P PP
Sbjct: 139 PPTSAPPRPSIPPPSP---ASAPPIPSKAPP 166
Score = 26.2 bits (55), Expect = 6.6
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = +2
Query: 827 PXPPXSXXPPPPXPPPXPXXXXXPPXXPXXXPP 925
P P S PP PP P PP P PP
Sbjct: 130 PPTPQSELRPPTSAPPRP---SIPPPSPASAPP 159
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,137,241
Number of Sequences: 5004
Number of extensions: 11696
Number of successful extensions: 208
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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