Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_G23
         (928 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   1.7  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   3.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.0  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   6.9  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +2

Query: 842 SXXPPPPXPPPXPXXXXXP 898
           S  PP P PPP P     P
Sbjct: 335 SDTPPKPAPPPPPPSSSGP 353


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = -2

Query: 924 GGXXXGXXGGXXXXXGXGGGXGGG 853
           GG   G  GG        GG GGG
Sbjct: 28  GGVVTGASGGSIVVGANNGGGGGG 51


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 851  PPPPXPPP 874
            PPPP PPP
Sbjct: 1355 PPPPPPPP 1362


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 836  PXSXXPPPPXPPP 874
            P S  P PP PPP
Sbjct: 1852 PVSGSPEPPPPPP 1864


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 12/33 (36%), Positives = 12/33 (36%)
 Frame = +2

Query: 827 PXPPXSXXPPPPXPPPXPXXXXXPPXXPXXXPP 925
           P P  S   P    PP P     PP  P   PP
Sbjct: 25  PSPHQSPQAPQRGSPPNPS-QGPPPGGPPGAPP 56


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 10/30 (33%), Positives = 10/30 (33%)
 Frame = +2

Query: 836 PXSXXPPPPXPPPXPXXXXXPPXXPXXXPP 925
           P S  P  P P P P     P       PP
Sbjct: 437 PPSSNPVSPVPSPDPLDLAIPVRETLILPP 466


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,613
Number of Sequences: 438
Number of extensions: 2948
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30234750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)