Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_G22
         (894 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...   202   4e-53
SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...   202   7e-53
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    27   3.6  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    27   4.8  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    26   8.3  

>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  202 bits (494), Expect = 4e-53
 Identities = 104/172 (60%), Positives = 126/172 (73%), Gaps = 1/172 (0%)
 Frame = -2

Query: 719 QGFPMKQGVLTNSRVRLLMSKXHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 540
           QGFPM QGVL   RVRLL+   H CYRPRRDGERKRKSVRGCIV  +L+VLAL I+++G 
Sbjct: 59  QGFPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIIKQGE 118

Query: 539 QEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKR-VLPAKEGKENAKPRHKA 363
           Q+IPGLTD  VP+RLGPKRASKIR+ FNLSKEDDVR++V++R V+P KEGK   KP  KA
Sbjct: 119 QDIPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGK---KPYTKA 175

Query: 362 PKIQRLVTPVVLQXXXXXXXXXXXXXXXXKSSEAEYAKLLAQRKKESKVRRQ 207
           PKIQRLVTP  LQ                +   AE+A+L+A+R  E+K +R+
Sbjct: 176 PKIQRLVTPRTLQHKRHRFALKRRQAEKNREEAAEFAQLMAKRVAEAKQKRE 227



 Score = 48.4 bits (110), Expect = 1e-06
 Identities = 22/55 (40%), Positives = 27/55 (49%)
 Frame = -1

Query: 873 PGNGCQXLFEXGXXTSFVFFTKSAWGAEVEADQLGDEWKGYVLRVAGGNDKXRIP 709
           P NG Q L E         F +   G EV  D +G E+ GYV ++ GGNDK   P
Sbjct: 8   PANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQGFP 62


>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  202 bits (492), Expect = 7e-53
 Identities = 104/172 (60%), Positives = 126/172 (73%), Gaps = 1/172 (0%)
 Frame = -2

Query: 719 QGFPMKQGVLTNSRVRLLMSKXHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 540
           QGFPM QGVL   RVRLL+   H CYRPRRDGERKRKSVRGCIV  +L+VLAL IV++G 
Sbjct: 59  QGFPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIVKQGE 118

Query: 539 QEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKR-VLPAKEGKENAKPRHKA 363
           Q+IPGLTD  VP+RLGPKRASKIR+ FNLSKEDDVR++V++R V+P KEGK   KP  KA
Sbjct: 119 QDIPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGK---KPYTKA 175

Query: 362 PKIQRLVTPVVLQXXXXXXXXXXXXXXXXKSSEAEYAKLLAQRKKESKVRRQ 207
           PKIQRLVTP  LQ                +   AE+A+L+A+R  E+K +++
Sbjct: 176 PKIQRLVTPRTLQHKRHRFALKRRQAEKNREEAAEFAQLMAKRVAEAKQKKE 227



 Score = 48.4 bits (110), Expect = 1e-06
 Identities = 22/55 (40%), Positives = 27/55 (49%)
 Frame = -1

Query: 873 PGNGCQXLFEXGXXTSFVFFTKSAWGAEVEADQLGDEWKGYVLRVAGGNDKXRIP 709
           P NG Q L E         F +   G EV  D +G E+ GYV ++ GGNDK   P
Sbjct: 8   PANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQGFP 62


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 127 VDHFCGALWLELLESRIEADRLRLIS 204
           +D F  + W+ L++SR + D+ RLIS
Sbjct: 335 LDEFFVSYWVSLIKSRKQKDKKRLIS 360


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
 Frame = +3

Query: 327 QNYRGD*PLDLRCLMSGF----SIFFSFLGWEHAFDDITTYIIFFAKVEQLTDFGSTFGT 494
           +N   D P  L C+ +      S+ FS  G   A       +I + K E +   GSTFG 
Sbjct: 57  ENENEDLPKQLCCMSTHTGTVTSVRFSPNGQYLASGSDDRVVIIWHKEEAIPGLGSTFG- 115

Query: 495 *TAGYISISQSRNFLGTLAHNNKSQD 572
             +G       R++   L H+N  QD
Sbjct: 116 --SGEKHTENWRSYRRLLGHDNDIQD 139


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -2

Query: 740 SLAATTXQGFPMKQGVLTNSRVRLLMSKXHS 648
           +LA  T  GFP+ Q   T SRV  L S+ HS
Sbjct: 56  NLAEDTFSGFPLSQSRTTVSRVS-LGSRQHS 85


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,007,559
Number of Sequences: 5004
Number of extensions: 56182
Number of successful extensions: 122
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)