Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_G22
(894 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706... 189 3e-48
03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560... 188 4e-48
10_07_0139 + 13327851-13327880,13327999-13329049,13329089-133296... 29 3.8
01_02_0020 - 10269252-10269314,10269442-10269483,10269759-102702... 29 5.0
02_01_0295 - 1973115-1973404,1974138-1974663 29 6.6
01_01_0563 + 4142351-4144510,4145610-4147259,4147942-4148185,414... 29 6.6
02_05_0956 - 33064104-33066425 28 8.7
>07_03_1309 +
25669394-25669399,25669520-25669584,25670543-25670600,
25670683-25670791,25670872-25671144,25671348-25671589
Length = 250
Score = 189 bits (460), Expect = 3e-48
Identities = 105/187 (56%), Positives = 123/187 (65%), Gaps = 4/187 (2%)
Frame = -2
Query: 746 FVSLAATTXQGFPMKQGVLTNSRVRLLMSKXHSCYRP--RRDGERKRKSVRGCIVDANLS 573
F + QGFPMKQGVLT RVRLL+ + C+R RRDGER+RKSVRGCIV +LS
Sbjct: 50 FKIMGGCDKQGFPMKQGVLTAGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLS 109
Query: 572 VLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKRVLPAK 399
V+ LVIV+KG ++PGLTD PR GPKRASKIRKLFNLSK+DDVR+YV +R K
Sbjct: 110 VINLVIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRTFTTK 169
Query: 398 EGKENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXKSSEAEYAKLLAQRKKESK 219
GK+ + KAPKIQRLVTP+ LQ KS AEY KLLAQR KE +
Sbjct: 170 NGKKVS----KAPKIQRLVTPLTLQRKRARIADKKKRIAKKKSEAAEYQKLLAQRLKEQR 225
Query: 218 VRRQEEI 198
RR E +
Sbjct: 226 ERRSESL 232
Score = 44.4 bits (100), Expect = 1e-04
Identities = 22/59 (37%), Positives = 27/59 (45%)
Frame = -1
Query: 873 PGNGCQXLFEXGXXTSFVFFTKSAWGAEVEADQLGDEWKGYVLRVAGGNDKXRIPDETG 697
P GCQ E F EV D LG+E+KGYV ++ GG DK P + G
Sbjct: 8 PTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQG 66
>03_03_0207 -
15455163-15455389,15455623-15455895,15455991-15456099,
15456186-15456243,15457002-15457066,15457190-15457195
Length = 245
Score = 188 bits (459), Expect = 4e-48
Identities = 104/187 (55%), Positives = 124/187 (66%), Gaps = 4/187 (2%)
Frame = -2
Query: 746 FVSLAATTXQGFPMKQGVLTNSRVRLLMSKXHSCYRP--RRDGERKRKSVRGCIVDANLS 573
F + QGFPMKQGVLT+ RVRLL+ + C+R RRDGER+RKSVRGCIV +LS
Sbjct: 50 FKIMGGCDKQGFPMKQGVLTSGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLS 109
Query: 572 VLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKRVLPAK 399
V+ LVIV+KG ++PGLTD PR GPKRASKIRKLFNL+K+DDVR+YV +R K
Sbjct: 110 VINLVIVKKGDNDLPGLTDTEKPRMRGPKRASKIRKLFNLAKDDDVRKYVNTYRRTFTTK 169
Query: 398 EGKENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXKSSEAEYAKLLAQRKKESK 219
GK+ + KAPKIQRLVTP+ LQ KS AEY KLLAQR KE +
Sbjct: 170 NGKKVS----KAPKIQRLVTPLTLQRKRARIAQKKQRIAKKKSEAAEYQKLLAQRLKEQR 225
Query: 218 VRRQEEI 198
RR E +
Sbjct: 226 ERRSESL 232
Score = 44.4 bits (100), Expect = 1e-04
Identities = 22/59 (37%), Positives = 27/59 (45%)
Frame = -1
Query: 873 PGNGCQXLFEXGXXTSFVFFTKSAWGAEVEADQLGDEWKGYVLRVAGGNDKXRIPDETG 697
P GCQ E F EV D LG+E+KGYV ++ GG DK P + G
Sbjct: 8 PTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQG 66
>10_07_0139 +
13327851-13327880,13327999-13329049,13329089-13329648,
13329757-13329904,13330935-13331024,13331148-13331208,
13331301-13331450,13331571-13331629,13332148-13332282,
13333028-13333119,13333210-13333278
Length = 814
Score = 29.5 bits (63), Expect = 3.8
Identities = 13/53 (24%), Positives = 32/53 (60%)
Frame = -2
Query: 500 RLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQRLV 342
++ PK+A ++ + + +DD+ R V + +P+++ + A+ ++PK +R V
Sbjct: 325 KVEPKKAHCSDRISHKTTQDDMERKVPSKYIPSEKKGKTAESCSRSPKRERRV 377
>01_02_0020 -
10269252-10269314,10269442-10269483,10269759-10270244,
10270338-10270421,10270491-10270556,10270718-10270810,
10270901-10271987,10273338-10273362,10273881-10273899
Length = 654
Score = 29.1 bits (62), Expect = 5.0
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -1
Query: 243 CTEKEGIQGASPGRDQTQAVSFN 175
C KE IQGA+PG Q Q + N
Sbjct: 599 CLNKEAIQGANPGDSQMQIIMQN 621
>02_01_0295 - 1973115-1973404,1974138-1974663
Length = 271
Score = 28.7 bits (61), Expect = 6.6
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Frame = -2
Query: 626 GERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLT--DGNVPRRLGPKRASKIRKLFNL 453
G ++ RG + + S AL + GA PG +P R+G + +KIRKL +
Sbjct: 177 GIKRHNFKRGLMTHGSKSHRALGSI--GAGTTPGRVYKGKKMPGRMGGTK-TKIRKLKIV 233
Query: 452 SKEDDVRRYVVKRVLPAKEG 393
++D++ ++K +P K G
Sbjct: 234 KIDNDLKVVMIKGAVPGKPG 253
>01_01_0563 + 4142351-4144510,4145610-4147259,4147942-4148185,
4148280-4148830
Length = 1534
Score = 28.7 bits (61), Expect = 6.6
Identities = 15/65 (23%), Positives = 28/65 (43%)
Frame = -1
Query: 813 TKSAWGAEVEADQLGDEWKGYVLRVAGGNDKXRIPDETGRPDKQPCSSSDVKGPLMLQTA 634
T+ + +D+ G + KG+ ++ + R+PD + P S + V L+
Sbjct: 986 TQVLYSVSPRSDEPGSKHKGHFRKIQSHSSAKRLPDNSRSEQSSPESLACVANVLVTVGD 1045
Query: 633 PRWRE 619
WRE
Sbjct: 1046 RGWRE 1050
>02_05_0956 - 33064104-33066425
Length = 773
Score = 28.3 bits (60), Expect = 8.7
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3
Query: 399 LGWEHAFDDITTYIIFFAKV 458
+G EHA DD++TYII A V
Sbjct: 23 VGVEHATDDVSTYIIHVAHV 42
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,597,009
Number of Sequences: 37544
Number of extensions: 408123
Number of successful extensions: 1087
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1081
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -