Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_G22
         (894 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)              238   4e-63
SB_20469| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.95 
SB_59495| Best HMM Match : RnaseH (HMM E-Value=0.0011)                 30   2.9  
SB_53135| Best HMM Match : RnaseH (HMM E-Value=0.0016)                 30   2.9  
SB_55954| Best HMM Match : TIL (HMM E-Value=0.74)                      29   5.1  
SB_54650| Best HMM Match : IncA (HMM E-Value=0.84)                     29   6.7  
SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022)                 28   8.9  
SB_41444| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)
          Length = 212

 Score =  238 bits (583), Expect = 4e-63
 Identities = 117/174 (67%), Positives = 136/174 (78%)
 Frame = -2

Query: 719 QGFPMKQGVLTNSRVRLLMSKXHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 540
           QGFPMKQG++TN RVRLL+SK HSCYRPRR GERKRKSVRGCIVD+ LSVL+LVIV+KG 
Sbjct: 26  QGFPMKQGIMTNGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSQLSVLSLVIVKKGE 85

Query: 539 QEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAP 360
           Q+IPGLTD  +PRRLGPKR  KIRK+FNLSKEDDVR+YV++R LP KEGK   K + KAP
Sbjct: 86  QDIPGLTDNTIPRRLGPKRVGKIRKMFNLSKEDDVRQYVIRRPLPEKEGK---KAKSKAP 142

Query: 359 KIQRLVTPVVLQXXXXXXXXXXXXXXXXKSSEAEYAKLLAQRKKESKVRRQEEI 198
           KIQRLVTPVVLQ                K   A+YAKLLA+R KE+K +R E++
Sbjct: 143 KIQRLVTPVVLQRKRKRLALKRQRAQKCKQEAADYAKLLAKRAKEAKEKRHEQL 196



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 19/32 (59%), Positives = 22/32 (68%)
 Frame = -1

Query: 792 EVEADQLGDEWKGYVLRVAGGNDKXRIPDETG 697
           EV  + LGDEWKGYV R+ GGNDK   P + G
Sbjct: 2   EVSGECLGDEWKGYVFRITGGNDKQGFPMKQG 33


>SB_20469| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 31.5 bits (68), Expect = 0.95
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +2

Query: 641 CNMSGPLTSEDEHGCLSGRPVSSGILXLSLPPATRST 751
           C  S  L +E   GC S RP+ SG   L +P   R +
Sbjct: 105 CTSSAVLPAEKGGGCTSARPIRSGSCRLEVPSVQRQS 141


>SB_59495| Best HMM Match : RnaseH (HMM E-Value=0.0011)
          Length = 515

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 436 YVVMSSNACSQPRKEKKMLNPDIRHLRSRG 347
           Y V  +  C+ PR   K+L P + HLR +G
Sbjct: 50  YSVFPNGLCTCPRNFTKLLKPPLSHLRLKG 79


>SB_53135| Best HMM Match : RnaseH (HMM E-Value=0.0016)
          Length = 515

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 436 YVVMSSNACSQPRKEKKMLNPDIRHLRSRG 347
           Y V  +  C+ PR   K+L P + HLR +G
Sbjct: 50  YSVFPNGLCTCPRNFTKLLKPPLSHLRLKG 79


>SB_55954| Best HMM Match : TIL (HMM E-Value=0.74)
          Length = 172

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = -2

Query: 605 VRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRK 465
           VR C +D   +VLA  +  + A E  GLT+G V    GP R   +++
Sbjct: 86  VRSCPMDKQSTVLA--VETREACESKGLTEGCVSSAFGPGREEPVQE 130


>SB_54650| Best HMM Match : IncA (HMM E-Value=0.84)
          Length = 291

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 515 GNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVK 417
           G+   + GP + SKI K+    ++DDV+  VVK
Sbjct: 221 GSEAAKTGPNKLSKIDKVILAVEDDDVQEIVVK 253


>SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022)
          Length = 1421

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 11/26 (42%), Positives = 20/26 (76%)
 Frame = -2

Query: 272  SSEAEYAKLLAQRKKESKVRRQEEIK 195
            ++EAE  +L  Q+K+E K +R+EE++
Sbjct: 1173 AAEAERRRLEVQKKREEKKKREEEMR 1198


>SB_41444| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 194

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -2

Query: 467 KLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQR 348
           + F+++KEDD+  Y++   L  +  K NA   ++ P+  R
Sbjct: 137 RAFDVTKEDDITMYIIITPLFMRARKNNAMEYNQKPRDPR 176


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,355,507
Number of Sequences: 59808
Number of extensions: 446046
Number of successful extensions: 1278
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1275
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2562198215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)