Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_G22
         (894 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)             183   2e-46
At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) riboso...   182   4e-46
At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF051...    30   1.8  
At5g62730.1 68418.m07875 proton-dependent oligopeptide transport...    29   5.5  
At2g16390.1 68415.m01876 SNF2 domain-containing protein / helica...    28   9.6  

>At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)
          Length = 249

 Score =  183 bits (445), Expect = 2e-46
 Identities = 102/187 (54%), Positives = 120/187 (64%), Gaps = 4/187 (2%)
 Frame = -2

Query: 746 FVSLAATTXQGFPMKQGVLTNSRVRLLMSKXHSCYRP--RRDGERKRKSVRGCIVDANLS 573
           F  +     QGFPMKQGVLT  RVRLL+ +   C+R   RR GER+RKSVRGCIV  +LS
Sbjct: 50  FKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLS 109

Query: 572 VLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKRVLPAK 399
           VL LVIV+KG  ++PGLTD   PR  GPKRASKIRKLFNL KEDDVR+YV   +R    K
Sbjct: 110 VLNLVIVKKGVSDLPGLTDTEKPRMRGPKRASKIRKLFNLGKEDDVRKYVNTYRRTFTNK 169

Query: 398 EGKENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXKSSEAEYAKLLAQRKKESK 219
           +GK+ +    KAPKIQRLVTP+ LQ                 S  A+Y KLLA R KE +
Sbjct: 170 KGKKVS----KAPKIQRLVTPLTLQRKRARIADKKKRIAKANSDAADYQKLLASRLKEQR 225

Query: 218 VRRQEEI 198
            RR E +
Sbjct: 226 DRRSESL 232



 Score = 44.8 bits (101), Expect = 8e-05
 Identities = 22/59 (37%), Positives = 27/59 (45%)
 Frame = -1

Query: 873 PGNGCQXLFEXGXXTSFVFFTKSAWGAEVEADQLGDEWKGYVLRVAGGNDKXRIPDETG 697
           P  GCQ   E         F       EV  D LG+E+KGYV ++ GG DK   P + G
Sbjct: 8   PTTGCQKKLEIDDDQKLRAFFDKRLSQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQG 66


>At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) ribosomal
           protein S6, Arabidopsis thaliana, PID:g2662469
          Length = 250

 Score =  182 bits (442), Expect = 4e-46
 Identities = 102/178 (57%), Positives = 117/178 (65%), Gaps = 4/178 (2%)
 Frame = -2

Query: 719 QGFPMKQGVLTNSRVRLLMSKXHSCYRP--RRDGERKRKSVRGCIVDANLSVLALVIVRK 546
           QGFPMKQGVLT  RVRLL+ +   C+R   RR GER+RKSVRGCIV  +LSVL LVIV+K
Sbjct: 59  QGFPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKK 118

Query: 545 GAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKRVLPAKEGKENAKPR 372
           G  ++PGLTD   PR  GPKRASKIRKLFNL KEDDVR YV   +R    K+GKE +   
Sbjct: 119 GENDLPGLTDTEKPRMRGPKRASKIRKLFNLKKEDDVRTYVNTYRRKFTNKKGKEVS--- 175

Query: 371 HKAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXKSSEAEYAKLLAQRKKESKVRRQEEI 198
            KAPKIQRLVTP+ LQ                 S  A+Y KLLA R KE + RR E +
Sbjct: 176 -KAPKIQRLVTPLTLQRKRARIADKKKKIAKANSDAADYQKLLASRLKEQRDRRSESL 232



 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 22/59 (37%), Positives = 27/59 (45%)
 Frame = -1

Query: 873 PGNGCQXLFEXGXXTSFVFFTKSAWGAEVEADQLGDEWKGYVLRVAGGNDKXRIPDETG 697
           P  GCQ   E         F       EV  D LG+E+KGYV ++ GG DK   P + G
Sbjct: 8   PTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIKGGCDKQGFPMKQG 66


>At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF05178:
           Krr1 family
          Length = 638

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = -2

Query: 524 LTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRV--LPAKEGKENAK 378
           + +G+V ++   ++A +  K   + KEDDVR+  +KR+  +  KE KE  K
Sbjct: 288 VVEGSVRKKDNARKAQRKNKDERMKKEDDVRKEELKRLKNVKKKEIKEKMK 338


>At5g62730.1 68418.m07875 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 589

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 19/66 (28%), Positives = 30/66 (45%)
 Frame = +2

Query: 536 PGHPCAQ*QEPRPRDWRQQYIHELIYVFSLHRGAVCNMSGPLTSEDEHGCLSGRPVSSGI 715
           P H   Q  E      RQ+      ++FSL  GA+  ++  +  ED  G   G  VS+  
Sbjct: 181 PPHGAEQFDEETSSGRRQRSFFFNYFIFSLSCGALIAVTVVVWLEDNKGWSYGFGVSTAA 240

Query: 716 LXLSLP 733
           + +S+P
Sbjct: 241 ILISVP 246


>At2g16390.1 68415.m01876 SNF2 domain-containing protein / helicase
           domain-containing protein low similarity to RAD54
           [Drosophila melanogaster] GI:1765914; contains Pfam
           profiles PF00271: Helicase conserved C-terminal domain,
           PF00176: SNF2 family N-terminal domain
          Length = 888

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 536 EIPGLTDGNVPRRLGPKRASKIRKL 462
           E+PGL D  V   L PK+ ++++KL
Sbjct: 620 ELPGLADFTVVLNLSPKQLNEVKKL 644


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,123,405
Number of Sequences: 28952
Number of extensions: 310368
Number of successful extensions: 778
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2100696768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)