Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_G19
         (883 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0243 + 18629793-18630047,18630362-18630442,18631911-186323...    30   2.8  
06_01_0728 - 5356400-5356676,5356888-5357090,5357181-5357474,535...    29   4.9  
11_01_0572 + 4565353-4565535,4566856-4567095,4567922-4568086,456...    29   6.5  
04_04_1263 - 32207636-32207938,32208020-32208170,32208263-322085...    28   8.6  
04_04_0524 - 25916869-25916876,25917352-25917506,25917712-259178...    28   8.6  
01_03_0117 + 12684729-12685886,12685978-12686145,12686292-126863...    28   8.6  

>06_03_0243 +
           18629793-18630047,18630362-18630442,18631911-18632305,
           18632471-18632926,18633156-18633247,18633528-18633683,
           18635657-18636057
          Length = 611

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
 Frame = +1

Query: 25  LGPSLXTFALQPXRRSXRLLTKCXFSLXLRCA-----CSPPARASLXSPRTLLTKPS 180
           + P L    L+P R     L +C F    RC        PP+R+S  SP +L   P+
Sbjct: 152 ISPHLHDVVLRPLRCRLHALWRCFFHWRSRCCRHRGLSPPPSRSSPRSPSSLPAAPA 208


>06_01_0728 -
           5356400-5356676,5356888-5357090,5357181-5357474,
           5357940-5358063,5358157-5359496
          Length = 745

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +1

Query: 127 PPARASLXSPRTLLTKPSXRXCTTASSPAPXXVLSVXAWNXXAKARAPSS 276
           PPA A+L   R+ LTKP  R    A+ P+     +  + +  A    P++
Sbjct: 76  PPASAALLRRRSSLTKPKSRFVEPAAPPSSAAAAAASSTSSHASPAHPAA 125


>11_01_0572 +
           4565353-4565535,4566856-4567095,4567922-4568086,
           4568612-4568887
          Length = 287

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = -1

Query: 622 VLIFKYWLYLVLWILKYTLLFSHQGNELPTDEFSMLVYTI 503
           V +F  W+YL+ W+ ++TL ++     L T  F+++V  I
Sbjct: 62  VFLFLLWVYLLNWVRRFTLTYTDGSIWLTT--FAVMVSAI 99


>04_04_1263 -
           32207636-32207938,32208020-32208170,32208263-32208500,
           32208604-32208814,32208927-32209108,32209196-32209297,
           32210002-32211187,32212103-32212499,32212551-32212582,
           32212885-32213157,32213307-32213394,32213486-32213723,
           32213824-32214034,32214119-32214300,32214378-32214479,
           32214801-32216224,32216751-32216822,32217688-32217719,
           32218186-32218263,32218425-32218512,32218608-32218845,
           32219060-32219162,32219386-32219558,32219644-32219745,
           32219825-32220606,32220659-32221012,32224055-32224140,
           32224250-32224400,32224534-32224771,32224876-32225119,
           32225190-32225368,32225577-32225675,32225835-32227083
          Length = 3195

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = +3

Query: 327 YCYKLWV-GNGQEIVRKYFPLNFRTHHGRKLCQ--DHLQKLQP 446
           Y ++LW  GN  E++ K+F  ++  H     CQ  D L   +P
Sbjct: 720 YAWRLWKDGNATELLDKFFVDSYPLHEAFSFCQSDDRLTPAKP 762


>04_04_0524 -
           25916869-25916876,25917352-25917506,25917712-25917841,
           25918013-25918094,25918180-25918213,25918271-25918327,
           25918686-25918791,25920755-25920881
          Length = 232

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -1

Query: 601 LYLVLWILKYTLLFSHQGNELPTDEFSMLV 512
           L L+ +IL+Y L F  + N LP D F+ LV
Sbjct: 47  LCLLWYILRYVLGFFQRYNLLPRDSFTFLV 76


>01_03_0117 +
           12684729-12685886,12685978-12686145,12686292-12686336,
           12686438-12687280
          Length = 737

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
 Frame = +1

Query: 13  SASPLGPSLXTFALQPXRRSXRLLTKCX--FSLXLRCACSPPARASLXSPRTLLTKPSXR 186
           +A P  PS+    +QP +R     TK    F   L     PPA A   +P    T P+  
Sbjct: 237 AAMPKPPSVAP--VQPPQRPPAPATKPPPSFPPQLAPTMPPPAHAPAETPAPPTTPPALP 294

Query: 187 XCTTASSP 210
             TTA SP
Sbjct: 295 PATTAPSP 302


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,705,775
Number of Sequences: 37544
Number of extensions: 354004
Number of successful extensions: 855
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)